RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 CLEC5AQ9NY25 188 aa14.67□□□□□ -0.06
NUP88-204ENST00000572290 DEFB1P60022 68 aa14.66□□□□□ -0.06
NUP88-204ENST00000572290 PXDC1Q5TGL8 231 aa14.66□□□□□ -0.06
NUP88-204ENST00000572290 GDF5OSQ5U4N7 250 aa14.66□□□□□ -0.06
NUP88-204ENST00000572290 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.66□□□□□ -0.06
NUP88-204ENST00000572290 C17orf77Q96MU5 243 aa14.66□□□□□ -0.06
NUP88-204ENST00000572290 MARVELD1Q9BSK0 173 aa14.66□□□□□ -0.06
NUP88-204ENST00000572290 C1QTNF4Q9BXJ3 329 aa14.66□□□□□ -0.06
NUP88-204ENST00000572290 SAV1Q9H4B6 383 aaPredicted RBP14.66□□□□□ -0.06
NUP88-204ENST00000572290 SIX6O95475 246 aa14.65□□□□□ -0.06
NUP88-204ENST00000572290 RPL7P18124 248 aaKnown RBP14.65□□□□□ -0.06
NUP88-204ENST00000572290 SULT1A1P50225 295 aa14.65□□□□□ -0.06
NUP88-204ENST00000572290 PATE2Q6UY27 113 aa14.65□□□□□ -0.06
NUP88-204ENST00000572290 STX12Q86Y82 276 aa14.65□□□□□ -0.06
NUP88-204ENST00000572290 TMEM252Q8N6L7 170 aa14.65□□□□□ -0.06
NUP88-204ENST00000572290 CSNK1G2-AS1Q8NCQ2 148 aa14.65□□□□□ -0.06
NUP88-204ENST00000572290 UHRF2Q96PU4 802 aa14.65□□□□□ -0.06
NUP88-204ENST00000572290 MGST2Q99735 147 aa14.65□□□□□ -0.06
NUP88-204ENST00000572290 ARV1Q9H2C2 271 aa14.65□□□□□ -0.06
NUP88-204ENST00000572290 RPRMQ9NS64 109 aa14.65□□□□□ -0.06
NUP88-204ENST00000572290 UQCC1Q9NVA1 299 aa14.65□□□□□ -0.06
NUP88-204ENST00000572290 IGSF23A1L1A6 192 aa14.64□□□□□ -0.07
NUP88-204ENST00000572290 ZNF705EA8MWA4 302 aaPredicted RBP14.64□□□□□ -0.07
NUP88-204ENST00000572290 IGKV3-20P01619 116 aa14.64□□□□□ -0.07
NUP88-204ENST00000572290 S100A11P31949 105 aa14.64□□□□□ -0.07
NUP88-204ENST00000572290 RAB31Q13636 194 aa14.64□□□□□ -0.07
NUP88-204ENST00000572290 SPATA31B1PQ5VZV4 182 aa14.64□□□□□ -0.07
NUP88-204ENST00000572290 EBLN2Q6P2I7 272 aa14.64□□□□□ -0.07
NUP88-204ENST00000572290 RNF24Q9Y225 148 aa14.64□□□□□ -0.07
NUP88-204ENST00000572290 NUPR2A6NF83 97 aa14.63□□□□□ -0.07
NUP88-204ENST00000572290 DEFB4AO15263 64 aa14.63□□□□□ -0.07
NUP88-204ENST00000572290 JTBO76095 146 aa14.63□□□□□ -0.07
NUP88-204ENST00000572290 MIFP14174 115 aa14.63□□□□□ -0.07
NUP88-204ENST00000572290 CAMLGP49069 296 aa14.63□□□□□ -0.07
NUP88-204ENST00000572290 FGL1Q08830 312 aa14.63□□□□□ -0.07
NUP88-204ENST00000572290 Q8NAQ8 132 aa14.63□□□□□ -0.07
NUP88-204ENST00000572290 OR4B1Q8NGF8 309 aa14.63□□□□□ -0.07
NUP88-204ENST00000572290 C20orf173Q96LM9 149 aa14.63□□□□□ -0.07
NUP88-204ENST00000572290 XCL2Q9UBD3 114 aa14.63□□□□□ -0.07
NUP88-204ENST00000572290 WDR83OSQ9Y284 106 aa14.63□□□□□ -0.07
NUP88-204ENST00000572290 F6UB75 175 aa14.62□□□□□ -0.07
NUP88-204ENST00000572290 RLN2P04090 185 aa14.62□□□□□ -0.07
NUP88-204ENST00000572290 HBG1P69891 147 aa14.62□□□□□ -0.07
NUP88-204ENST00000572290 HBG2P69892 147 aa14.62□□□□□ -0.07
NUP88-204ENST00000572290 VWC2Q2TAL6 325 aa14.62□□□□□ -0.07
NUP88-204ENST00000572290 CEMP1Q6PRD7 247 aaPredicted RBP14.62□□□□□ -0.07
NUP88-204ENST00000572290 C11orf45Q8TAV5 145 aa14.62□□□□□ -0.07
NUP88-204ENST00000572290 CLUHP3Q96NS8 147 aa14.62□□□□□ -0.07
NUP88-204ENST00000572290 NMES1Q9C002 83 aa14.62□□□□□ -0.07
NUP88-204ENST00000572290 X6R8D5 127 aa14.62□□□□□ -0.07
NUP88-204ENST00000572290 LYSTQ99698 3801 aa14.61□□□□□ -0.07
NUP88-204ENST00000572290 IGHV4-28A0A0C4DH34 117 aa14.61□□□□□ -0.07
NUP88-204ENST00000572290 A0A0J9YX75 114 aa14.61□□□□□ -0.07
NUP88-204ENST00000572290 COX7A2P2O60397 106 aa14.61□□□□□ -0.07
NUP88-204ENST00000572290 CYCSP99999 105 aaKnown RBP14.61□□□□□ -0.07
NUP88-204ENST00000572290 ATP6V1FQ16864 119 aa14.61□□□□□ -0.07
NUP88-204ENST00000572290 LINC00305Q7Z4B0 112 aa14.61□□□□□ -0.07
NUP88-204ENST00000572290 MFFQ9GZY8 342 aa14.61□□□□□ -0.07
NUP88-204ENST00000572290 ELOA3CA0A087WX78 387 aaPredicted RBP14.6□□□□□ -0.07
NUP88-204ENST00000572290 TRAV8-2A0A0B4J237 113 aa14.6□□□□□ -0.07
NUP88-204ENST00000572290 UBE2L5PA0A1B0GUS4 154 aa14.6□□□□□ -0.07
NUP88-204ENST00000572290 FXYD7P58549 80 aa14.6□□□□□ -0.07
NUP88-204ENST00000572290 NANOS2P60321 138 aaKnown RBP14.6□□□□□ -0.07
NUP88-204ENST00000572290 LRRC37A5PQ49AS3 106 aa14.6□□□□□ -0.07
NUP88-204ENST00000572290 FAM78BQ5VT40 261 aa14.6□□□□□ -0.07
NUP88-204ENST00000572290 IGFL4Q6B9Z1 124 aa14.6□□□□□ -0.07
NUP88-204ENST00000572290 Q6ZRG5 221 aa14.6□□□□□ -0.07
NUP88-204ENST00000572290 TENM2Q9NT68 2774 aa14.59□□□□□ -0.07
NUP88-204ENST00000572290 A0A087X0K7 114 aa14.59□□□□□ -0.07
NUP88-204ENST00000572290 E5RGE8 158 aa14.59□□□□□ -0.07
NUP88-204ENST00000572290 SSNA1O43805 119 aa14.59□□□□□ -0.07
NUP88-204ENST00000572290 RBMY1A1P0DJD3 496 aaKnown RBP14.59□□□□□ -0.07
NUP88-204ENST00000572290 RBMY1CP0DJD4 496 aa14.59□□□□□ -0.07
NUP88-204ENST00000572290 PSG9Q00887 426 aa14.59□□□□□ -0.07
NUP88-204ENST00000572290 BAXQ07812 192 aa14.59□□□□□ -0.07
NUP88-204ENST00000572290 RBMY1FQ15415 496 aaKnown RBP14.59□□□□□ -0.07
NUP88-204ENST00000572290 MIC13Q5XKP0 118 aa14.59□□□□□ -0.07
NUP88-204ENST00000572290 PHLDA1Q8WV24 401 aaPredicted RBP14.59□□□□□ -0.07
NUP88-204ENST00000572290 TMEM37Q8WXS4 190 aa14.59□□□□□ -0.07
NUP88-204ENST00000572290 KLK5Q9Y337 293 aaPredicted RBP14.59□□□□□ -0.07
NUP88-204ENST00000572290 PRR20EP86478 221 aa14.58□□□□□ -0.08
NUP88-204ENST00000572290 PRR20CP86479 221 aa14.58□□□□□ -0.08
NUP88-204ENST00000572290 PRR20DP86480 221 aa14.58□□□□□ -0.08
NUP88-204ENST00000572290 PRR20BP86481 221 aa14.58□□□□□ -0.08
NUP88-204ENST00000572290 PRR20AP86496 221 aa14.58□□□□□ -0.08
NUP88-204ENST00000572290 C10orf113Q5VZT2 155 aa14.58□□□□□ -0.08
NUP88-204ENST00000572290 RNF182Q8N6D2 247 aa14.58□□□□□ -0.08
NUP88-204ENST00000572290 ZNF709Q8N972 641 aa14.58□□□□□ -0.08
NUP88-204ENST00000572290 LRRC20Q8TCA0 184 aa14.58□□□□□ -0.08
NUP88-204ENST00000572290 SLC25A31Q9H0C2 315 aa14.58□□□□□ -0.08
NUP88-204ENST00000572290 OR5AC2Q9NZP5 309 aa14.58□□□□□ -0.08
NUP88-204ENST00000572290 DNAH1Q9P2D7 4330 aa14.57□□□□□ -0.08
NUP88-204ENST00000572290 H0YIZ8 118 aa14.57□□□□□ -0.08
NUP88-204ENST00000572290 MRPS12O15235 138 aaKnown RBP14.57□□□□□ -0.08
NUP88-204ENST00000572290 RPL29P47914 159 aaKnown RBP14.57□□□□□ -0.08
NUP88-204ENST00000572290 H2BFSP57053 126 aa14.57□□□□□ -0.08
NUP88-204ENST00000572290 OPCMLQ14982 345 aa14.57□□□□□ -0.08
NUP88-204ENST00000572290 BPIFA4PQ86YQ2 179 aa14.57□□□□□ -0.08
NUP88-204ENST00000572290 OR1L4Q8NGR5 311 aa14.57□□□□□ -0.08
NUP88-204ENST00000572290 SLC35B3Q9H1N7 401 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms