RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 TMEM256Q8N2U0 113 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 SLC24A4Q8NFF2 622 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 OR5H2Q8NGV7 314 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 LINC01587Q99440 93 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 PBDC1Q9BVG4 233 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 AUNIPQ9H7T9 357 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 NOP10Q9NPE3 64 aaKnown RBP3.95□□□□□ -1.78
VPS53-208ENST00000570650 IFT46Q9NQC8 304 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 TPRKBQ9Y3C4 175 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 TRAV12-2A0A075B6T6 113 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 TRAV9-2A0A087WT02 112 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 A0A096LPF7 62 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 BOLA2-SMG1P6H3BVE0 249 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 NXPH4O95158 308 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 IGKV1-5P01602 117 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 PMP2P02689 132 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 C1QBP02746 253 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 HTN1P15515 57 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 ELK1P19419 428 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 MEOX2P50222 304 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 AKR1C2P52895 323 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 TAS2R46P59540 309 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 C2orf83Q53S99 150 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 C1orf194Q5T5A4 169 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 IDNKQ5T6J7 187 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 C22orf42Q6IC83 251 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 ETFRF1Q6IPR1 90 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 ZNF493Q6ZR52 646 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 LINC00612Q8N6U2 182 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 RNASE8Q8TDE3 154 aaKnown RBP3.94□□□□□ -1.78
VPS53-208ENST00000570650 RNASEH2CQ8TDP1 164 aaKnown RBP3.94□□□□□ -1.78
VPS53-208ENST00000570650 TMEM263Q8WUH6 116 aaKnown RBP3.94□□□□□ -1.78
VPS53-208ENST00000570650 NPIPB3Q92617 1050 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 SLC25A38Q96DW6 304 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 ACY3Q96HD9 319 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 DUSP21Q9H596 190 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 DIABLOQ9NR28 239 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 NDUFB11Q9NX14 153 aa3.94□□□□□ -1.78
VPS53-208ENST00000570650 ZNF98A6NK75 572 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 GAGE7O76087 117 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 ATG12O94817 140 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 RLN2P04090 185 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 GAGE12FP0CL80 117 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 GAGE12GP0CL81 117 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 GAGE12IP0CL82 117 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 ZNF182P17025 639 aaPredicted RBP3.93□□□□□ -1.78
VPS53-208ENST00000570650 UCP1P25874 307 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 PRSS48Q7RTY5 328 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 TMED4Q7Z7H5 227 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 OR8I2Q8N0Y5 310 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 OR5H6Q8NGV6 325 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 PPP1R14BQ96C90 147 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 VSIG2Q96IQ7 327 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 SLC25A39Q9BZJ4 359 aaPredicted RBP3.93□□□□□ -1.78
VPS53-208ENST00000570650 MSRB1Q9NZV6 116 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 MGAT4CQ9UBM8 478 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 ANAPC10Q9UM13 185 aa3.93□□□□□ -1.78
VPS53-208ENST00000570650 K7EP13 123 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 HRH1P35367 487 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 GALR1P47211 349 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 SPCS3P61009 180 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 LYZP61626 148 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 TSPAN5P62079 268 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 GAMTQ14353 236 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 MORN5Q5VZ52 161 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 NOXA1Q86UR1 476 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 OR52E5Q8NH55 327 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 RNASE11Q8TAA1 199 aaKnown RBP3.92□□□□□ -1.78
VPS53-208ENST00000570650 RRNAD1Q96FB5 475 aaKnown RBP3.92□□□□□ -1.78
VPS53-208ENST00000570650 LINC00467Q9BRT7 94 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 HEYLQ9NQ87 328 aaPredicted RBP3.92□□□□□ -1.78
VPS53-208ENST00000570650 LY96Q9Y6Y9 160 aa3.92□□□□□ -1.78
VPS53-208ENST00000570650 LRP1Q07954 4544 aaKnown RBP3.91□□□□□ -1.78
VPS53-208ENST00000570650 A0A0G2JRQ6 117 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 ZFP92A6NM28 416 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 SNRPGP15A8MWD9 76 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 SNURFLB1AK76 121 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 H7BYZ3 331 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 FABP1P07148 127 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 RND3P61587 244 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 RHOBP62745 196 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 TRIM16LQ309B1 348 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 AARDQ4LEZ3 155 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 Q6ZSA8 131 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 CCDC28AQ8IWP9 274 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 TMEM170AQ8WVE7 144 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 RPL36ALQ969Q0 106 aaKnown RBP3.91□□□□□ -1.78
VPS53-208ENST00000570650 TP53RKQ96S44 253 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 C20orf144Q9BQM9 153 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 RSG1Q9BU20 258 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 SLC25A32Q9H2D1 315 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 TXNL4BQ9NX01 149 aaKnown RBP3.91□□□□□ -1.78
VPS53-208ENST00000570650 PPP1R14DQ9NXH3 145 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 ICOSQ9Y6W8 199 aa3.91□□□□□ -1.78
VPS53-208ENST00000570650 TRAV8-2A0A0B4J237 113 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 LRCOL1A6NCL2 159 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 CEBPZOSA8MTT3 80 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 PSCAO43653 123 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 PGAM2P15259 253 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms