RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 IL4P05112 153 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 NMUP48645 174 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 FAM231DQ6ZW35 169 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 MBD3L2Q8NHZ7 208 aaPredicted RBP11.61□□□□□ -0.55
VPS35-210ENST00000568784 PPP1R14DQ9NXH3 145 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 K7EM74 188 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 CRYABP02511 175 aaKnown RBP11.61□□□□□ -0.55
VPS35-210ENST00000568784 CSN1S1P47710 185 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 MBD6Q96DN6 1003 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 SPG11Q96JI7 2443 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 RIGQ13278 110 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 COTL1Q14019 142 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 FMC1Q96HJ9 113 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 C18orf15Q96N68 181 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 MC5RP33032 325 aa11.6□□□□□ -0.55
VPS35-210ENST00000568784 ADIPOQQ15848 244 aa11.6□□□□□ -0.55
VPS35-210ENST00000568784 IGLC7A0M8Q6 106 aa11.6□□□□□ -0.55
VPS35-210ENST00000568784 C12orf54Q6X4T0 127 aa11.6□□□□□ -0.55
VPS35-210ENST00000568784 ATP5L2Q7Z4Y8 100 aa11.6□□□□□ -0.55
VPS35-210ENST00000568784 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.6□□□□□ -0.552e-8■■■■□ 26
VPS35-210ENST00000568784 RASL11AQ6T310 242 aa11.59□□□□□ -0.55
VPS35-210ENST00000568784 GATA4P43694 442 aa11.59□□□□□ -0.55
VPS35-210ENST00000568784 IGFL4Q6B9Z1 124 aa11.59□□□□□ -0.55
VPS35-210ENST00000568784 PNKDQ8N490 385 aa11.59□□□□□ -0.55
VPS35-210ENST00000568784 TACC2O95359 2948 aa11.59□□□□□ -0.55
VPS35-210ENST00000568784 PTPRBP23467 1997 aa11.59□□□□□ -0.55
VPS35-210ENST00000568784 NCBP2LA6PVI3 153 aaKnown RBP11.59□□□□□ -0.55
VPS35-210ENST00000568784 GNG7O60262 68 aa11.59□□□□□ -0.55
VPS35-210ENST00000568784 MEF2CQ06413 473 aaPredicted RBP11.59□□□□□ -0.55
VPS35-210ENST00000568784 GFRALQ6UXV0 394 aa11.59□□□□□ -0.55
VPS35-210ENST00000568784 SLC25A39Q9BZJ4 359 aaPredicted RBP11.59□□□□□ -0.55
VPS35-210ENST00000568784 RALYQ9UKM9 306 aaKnown RBP11.58□□□□□ -0.55
VPS35-210ENST00000568784 ATMQ13315 3056 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 LAMA5O15230 3695 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 CGB1A6NKQ9 187 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 LGALS7P47929 136 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 PPP1R27Q86WC6 154 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 ST20Q9HBF5 79 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 PSMB11A5LHX3 300 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 FBLL1A6NHQ2 334 aaKnown RBP11.58□□□□□ -0.56
VPS35-210ENST00000568784 SMKR1H3BMG3 65 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 TOMM40O96008 361 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 Q86TA4 180 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 C8orf46Q8TAG6 207 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 WIPF2Q8TF74 440 aaPredicted RBP11.58□□□□□ -0.56
VPS35-210ENST00000568784 AAMDCQ9H7C9 122 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 CTSZQ9UBR2 303 aa11.58□□□□□ -0.56
VPS35-210ENST00000568784 TMEM178BH3BS89 294 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 OR10AG1Q8NH19 301 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 SCNM1Q9BWG6 230 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 TMEM133Q9H2Q1 129 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 IGHV3OR16-13A0A075B7E8 117 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 IGHV3-74A0A0B4J1X5 117 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 NCR2O95944 276 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 GPR183P32249 361 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 OR2J3O76001 311 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 IGHV1-8P0DP01 117 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 URB1-AS1Q96HZ7 61 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 THYN1Q9P016 225 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 KALRNO60229 2985 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 GAGE10A6NGK3 116 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 LY6HO94772 140 aa11.57□□□□□ -0.56
VPS35-210ENST00000568784 IFI27P40305 119 aaPredicted RBP11.57□□□□□ -0.56
VPS35-210ENST00000568784 KLF5Q13887 457 aaPredicted RBP11.57□□□□□ -0.56
VPS35-210ENST00000568784 TMEM213A2RRL7 107 aa11.56□□□□□ -0.56
VPS35-210ENST00000568784 ORM1P02763 201 aa11.56□□□□□ -0.56
VPS35-210ENST00000568784 CHCHD1Q96BP2 118 aaKnown RBP11.56□□□□□ -0.56
VPS35-210ENST00000568784 PSG8Q9UQ74 426 aa11.56□□□□□ -0.56
VPS35-210ENST00000568784 CACNG7P62955 275 aa11.56□□□□□ -0.56
VPS35-210ENST00000568784 PLA2G2CQ5R387 149 aa11.56□□□□□ -0.56
VPS35-210ENST00000568784 D6R8Y8 96 aa11.56□□□□□ -0.56
VPS35-210ENST00000568784 TWIST1Q15672 202 aa11.56□□□□□ -0.56
VPS35-210ENST00000568784 BVES-AS1Q5T3Y7 98 aa11.56□□□□□ -0.56
VPS35-210ENST00000568784 TRGV9Q99603 122 aa11.56□□□□□ -0.56
VPS35-210ENST00000568784 SIGLEC9Q9Y336 463 aa11.56□□□□□ -0.56
VPS35-210ENST00000568784 C7orf71A4D174 169 aa11.55□□□□□ -0.56
VPS35-210ENST00000568784 TMEM189A5PLL7 270 aa11.55□□□□□ -0.56
VPS35-210ENST00000568784 LOXP28300 417 aaPredicted RBP11.55□□□□□ -0.56
VPS35-210ENST00000568784 PPIFP30405 207 aaKnown RBP11.55□□□□□ -0.56
VPS35-210ENST00000568784 AMN1Q8IY45 258 aa11.55□□□□□ -0.56
VPS35-210ENST00000568784 OTORQ9NRC9 128 aa11.55□□□□□ -0.56
VPS35-210ENST00000568784 Q8TAT8 98 aa11.55□□□□□ -0.56
VPS35-210ENST00000568784 C8orf49Q96NF6 230 aa11.55□□□□□ -0.56
VPS35-210ENST00000568784 IGF2RP11717 2491 aa11.55□□□□□ -0.56
VPS35-210ENST00000568784 CKS2P33552 79 aa11.55□□□□□ -0.56
VPS35-210ENST00000568784 PSG9Q00887 426 aa11.55□□□□□ -0.56
VPS35-210ENST00000568784 NGBQ9NPG2 151 aa11.55□□□□□ -0.56
VPS35-210ENST00000568784 H3BUT2 72 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 IGLV2-23P01705 113 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 TMEM30BQ3MIR4 351 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 PRSS33Q8NF86 280 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 PRELID3AQ96N28 172 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 A0A1B0GXF2 115 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 FAM106CPP0CH98 169 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 GP9P14770 177 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 FCER1GP30273 86 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 FAM106AQ4KMX7 169 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 PRSS57Q6UWY2 283 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 THAP8Q8NA92 274 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 OR4A5Q8NH83 315 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms