RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TMEM241Q24JQ0 296 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 LGALS9BQ3B8N2 356 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 RNASE13Q5GAN3 156 aaKnown RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 KPRPQ5T749 579 aaPredicted RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 LGALS9CQ6DKI2 356 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 MORN3Q6PF18 240 aaPredicted RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 HSD17B13Q7Z5P4 300 aaPredicted RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 KTN1-AS1Q86SY8 53 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 LINC01551Q86U37 167 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 SNX29P2Q8IUI4 249 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 PRR15Q8IV56 129 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 RPP25LQ8N5L8 163 aaKnown RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 TMEM229BQ8NBD8 167 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 SLC25A40Q8TBP6 338 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 NPRL2Q8WTW4 380 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 ORAOV1Q8WV07 137 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 DCUN1D4Q92564 292 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 RPL36ALQ969Q0 106 aaKnown RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 TMEM203Q969S6 136 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 NARS2Q96I59 477 aaKnown RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 GPX7Q96SL4 187 aaPredicted RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 TIMM17AQ99595 171 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 SOSTQ9BQB4 213 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 PAXXQ9BUH6 204 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 POLR2J2Q9GZM3 115 aaKnown RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 OR8D2Q9GZM6 311 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 POLR2J3Q9H1A7 115 aaKnown RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 CXCL16Q9H2A7 254 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 SDF2L1Q9HCN8 221 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 HMG20AQ9NP66 347 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 OTORQ9NRC9 128 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 ZNF581Q9P0T4 197 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 NAT8BQ9UHF3 227 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 TRAPPC2LQ9UL33 140 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 FAT4Q6V0I7 4981 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 SCN1AP35498 2009 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 DNAH9Q9NYC9 4486 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 IGHV1-69-2A0A0G2JMI3 117 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 SPTY2D1-AS1A0A0U1RR47 76 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 SLC37A4O43826 429 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 SUPT7LO94864 414 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 IGHV3-13P01766 116 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 IFNA4P05014 189 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 CISD3P0C7P0 127 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 SEC11BP0C7V7 166 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 METTL15P1P0C7V9 234 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 P0C879 139 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 HOXB6P17509 224 aaKnown RBP2.04□□□□□ -2.08
VPS35-209ENST00000568642 AZU1P20160 251 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 EVI2AP22794 236 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 OPRK1P41145 380 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 NOVP48745 357 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 PIGPP57054 158 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 GNG2P59768 71 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 KMT2AQ03164 3969 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 ELOCQ15369 112 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 MMDQ15546 238 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 OR8G1Q15617 311 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 RNASE10Q5GAN6 216 aaKnown RBP2.04□□□□□ -2.08
VPS35-209ENST00000568642 COA6Q5JTJ3 125 aaKnown RBP2.04□□□□□ -2.08
VPS35-209ENST00000568642 Q6Q795 121 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 TMEM14EPQ6UXP3 125 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 Q6ZS49 121 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 NTM-AS1Q6ZSK4 140 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 KRTAP5-2Q701N4 177 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 TMUB2Q71RG4 321 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 SLC25A29Q8N8R3 303 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 C20orf203Q8NBC4 194 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 OR52R1Q8NGF1 315 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 C15orf40Q8WUR7 153 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 RTN4IP1Q8WWV3 396 aaPredicted RBP2.04□□□□□ -2.08
VPS35-209ENST00000568642 HIST1H2BAQ96A08 127 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 PHYHIPLQ96FC7 376 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 ZNF414Q96IQ9 312 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 TRIB3Q96RU7 358 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 SYT15Q9BQS2 421 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 NAA38Q9BRA0 125 aaKnown RBP2.04□□□□□ -2.08
VPS35-209ENST00000568642 TMEM133Q9H2Q1 129 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 TCEAL2Q9H3H9 227 aaPredicted RBP2.04□□□□□ -2.08
VPS35-209ENST00000568642 C16orf95Q9H693 158 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 RNF122Q9H9V4 155 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 LHX9Q9NQ69 397 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 KCNIP2Q9NS61 270 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 TVP23BQ9NYZ1 205 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 ZNF835Q9Y2P0 537 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 RNF11Q9Y3C5 154 aa2.04□□□□□ -2.08
VPS35-209ENST00000568642 ANKRD36A6QL64 1941 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 NCKAP5O14513 1909 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 IGHV1-45A0A0A0MS14 117 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 RIIAD1A6NNX1 92 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 FAM25AB3EWG3 89 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 FAM25CB3EWG5 89 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 FAM25GB3EWG6 89 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 H0YJW9 148 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 BUB1B-PAK6H3BSN5 160 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 M0R378 163 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 SLC22A1O15245 554 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 CCL25O15444 150 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 ZNF73O43830 326 aaPredicted RBP2.03□□□□□ -2.08
VPS35-209ENST00000568642 SERF1AO75920 110 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms