RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 FAM78BQ5VT40 261 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 EBLN2Q6P2I7 272 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 UBE2DNLQ8IWF7 75 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 OR8I2Q8N0Y5 310 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 C1orf158Q8N1D5 194 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 THAP8Q8NA92 274 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 MITD1Q8WV92 249 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 PPP1R14BQ96C90 147 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 GOLT1BQ9Y3E0 138 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 RYR1P21817 5038 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 A0A0J9YX75 114 aa10.61□□□□□ -0.71
CLN3-236ENST00000568558 IFNA21P01568 189 aa10.61□□□□□ -0.71
CLN3-236ENST00000568558 MEOX2P50222 304 aa10.61□□□□□ -0.71
CLN3-236ENST00000568558 RAB11AP62491 216 aa10.61□□□□□ -0.71
CLN3-236ENST00000568558 SAMD13Q5VXD3 122 aa10.61□□□□□ -0.71
CLN3-236ENST00000568558 RPRMQ9NS64 109 aa10.61□□□□□ -0.71
CLN3-236ENST00000568558 PLA2G2EQ9NZK7 142 aa10.61□□□□□ -0.71
CLN3-236ENST00000568558 IGLV2-18A0A075B6J9 118 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 LOC102723971A0A1B0GUV8 181 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 FAM240BA0A1B0GVZ2 78 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 A8MTW9 85 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 WRBO00258 174 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 CCSO14618 274 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 SYNGR2O43760 224 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 HBE1P02100 147 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 H2AFB2P0C5Z0 115 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 Q6ZR54 194 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 OR4D5Q8NGN0 318 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 C20orf173Q96LM9 149 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 SLC25A32Q9H2D1 315 aa10.6□□□□□ -0.71
CLN3-236ENST00000568558 YTHDF2Q9Y5A9 579 aaKnown RBP10.6□□□□□ -0.71
CLN3-236ENST00000568558 H3BP45 60 aa10.59□□□□□ -0.71
CLN3-236ENST00000568558 MED6O75586 246 aa10.59□□□□□ -0.71
CLN3-236ENST00000568558 CFDP00746 253 aaPredicted RBP10.59□□□□□ -0.71
CLN3-236ENST00000568558 HTN3P15516 51 aa10.59□□□□□ -0.71
CLN3-236ENST00000568558 POLR2GP62487 172 aaKnown RBP eCLIP10.59□□□□□ -0.71
CLN3-236ENST00000568558 ID3Q02535 119 aa10.59□□□□□ -0.71
CLN3-236ENST00000568558 RRN3P1Q2M238 152 aa10.59□□□□□ -0.71
CLN3-236ENST00000568558 RNF212Q495C1 297 aa10.59□□□□□ -0.71
CLN3-236ENST00000568558 MZT2BQ6NZ67 158 aa10.59□□□□□ -0.71
CLN3-236ENST00000568558 C16orf92Q96LL3 132 aa10.59□□□□□ -0.71
CLN3-236ENST00000568558 C17orf77Q96MU5 243 aa10.59□□□□□ -0.71
CLN3-236ENST00000568558 DOK5Q9P104 306 aa10.59□□□□□ -0.71
CLN3-236ENST00000568558 PAIP2BQ9ULR5 123 aaKnown RBP10.59□□□□□ -0.71
CLN3-236ENST00000568558 SLC45A2Q9UMX9 530 aa10.59□□□□□ -0.71
CLN3-236ENST00000568558 ZNF98A6NK75 572 aa10.58□□□□□ -0.72
CLN3-236ENST00000568558 PRSS46E5RG02 174 aa10.58□□□□□ -0.72
CLN3-236ENST00000568558 GALR1P47211 349 aa10.58□□□□□ -0.72
CLN3-236ENST00000568558 AMTNQ6UX39 209 aa10.58□□□□□ -0.72
CLN3-236ENST00000568558 ZNF431Q8TF32 576 aaPredicted RBP10.58□□□□□ -0.72
CLN3-236ENST00000568558 SLC25A22Q9H936 323 aa10.58□□□□□ -0.72
CLN3-236ENST00000568558 SSSCA1O60232 199 aa10.57□□□□□ -0.72
CLN3-236ENST00000568558 DAD1P61803 113 aa10.57□□□□□ -0.72
CLN3-236ENST00000568558 IAH1Q2TAA2 248 aaPredicted RBP10.57□□□□□ -0.72
CLN3-236ENST00000568558 TMEM88Q6PEY1 159 aa10.57□□□□□ -0.72
CLN3-236ENST00000568558 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.57□□□□□ -0.72
CLN3-236ENST00000568558 NRARPQ7Z6K4 114 aa10.57□□□□□ -0.72
CLN3-236ENST00000568558 ZBTB8BQ8NAP8 495 aaPredicted RBP10.57□□□□□ -0.72
CLN3-236ENST00000568558 ENKURQ8TC29 256 aa10.57□□□□□ -0.72
CLN3-236ENST00000568558 IGF2BP2-AS1Q96M15 143 aa10.57□□□□□ -0.72
CLN3-236ENST00000568558 CIB3Q96Q77 187 aaPredicted RBP10.57□□□□□ -0.72
CLN3-236ENST00000568558 RSG1Q9BU20 258 aa10.57□□□□□ -0.72
CLN3-236ENST00000568558 SCGB1D2O95969 90 aa10.56□□□□□ -0.72
CLN3-236ENST00000568558 GATA2P23769 480 aaPredicted RBP10.56□□□□□ -0.72
CLN3-236ENST00000568558 SPANXN5Q5MJ07 72 aa10.56□□□□□ -0.72
CLN3-236ENST00000568558 TMEM182Q6ZP80 229 aaPredicted RBP10.56□□□□□ -0.72
CLN3-236ENST00000568558 BPIFCQ8NFQ6 507 aa10.56□□□□□ -0.72
CLN3-236ENST00000568558 TMEM208Q9BTX3 173 aa10.56□□□□□ -0.72
CLN3-236ENST00000568558 GSKIPQ9P0R6 139 aa10.56□□□□□ -0.72
CLN3-236ENST00000568558 RCL1Q9Y2P8 373 aaKnown RBP10.56□□□□□ -0.72
CLN3-236ENST00000568558 HSPG2P98160 4391 aa10.56□□□□□ -0.72
CLN3-236ENST00000568558 CRXO43186 299 aaPredicted RBP10.55□□□□□ -0.72
CLN3-236ENST00000568558 CCNKO75909 580 aa10.55□□□□□ -0.72
CLN3-236ENST00000568558 ORM2P19652 201 aa10.55□□□□□ -0.72
CLN3-236ENST00000568558 CNN1P51911 297 aaKnown RBP10.55□□□□□ -0.72
CLN3-236ENST00000568558 RPP30P78346 268 aaKnown RBP10.55□□□□□ -0.72
CLN3-236ENST00000568558 SOHLH1Q5JUK2 328 aa10.55□□□□□ -0.72
CLN3-236ENST00000568558 C12orf45Q8N5I9 185 aaPredicted RBP10.55□□□□□ -0.72
CLN3-236ENST00000568558 OR11H7Q8NGC8 314 aa10.55□□□□□ -0.72
CLN3-236ENST00000568558 OR1B1Q8NGR6 318 aa10.55□□□□□ -0.72
CLN3-236ENST00000568558 GPR82Q96P67 336 aa10.55□□□□□ -0.72
CLN3-236ENST00000568558 LRP1BQ9NZR2 4599 aa10.55□□□□□ -0.72
CLN3-236ENST00000568558 ABCA13Q86UQ4 5058 aa10.54□□□□□ -0.72
CLN3-236ENST00000568558 TRAV8-2A0A0B4J237 113 aa10.54□□□□□ -0.72
CLN3-236ENST00000568558 FAM25EA8MYX2 175 aa10.54□□□□□ -0.72
CLN3-236ENST00000568558 DUSP14O95147 198 aaKnown RBP10.54□□□□□ -0.72
CLN3-236ENST00000568558 MBPP02686 304 aaPredicted RBP10.54□□□□□ -0.72
CLN3-236ENST00000568558 IL5P05113 134 aa10.54□□□□□ -0.72
CLN3-236ENST00000568558 AKR1C1Q04828 323 aa10.54□□□□□ -0.72
CLN3-236ENST00000568558 SPINK13Q1W4C9 94 aa10.54□□□□□ -0.72
CLN3-236ENST00000568558 TMEM147Q9BVK8 224 aa10.54□□□□□ -0.72
CLN3-236ENST00000568558 PSENENQ9NZ42 101 aa10.54□□□□□ -0.72
CLN3-236ENST00000568558 STRAPQ9Y3F4 350 aaKnown RBP10.54□□□□□ -0.72
CLN3-236ENST00000568558 PMS2P5A8MQ11 134 aa10.53□□□□□ -0.72
CLN3-236ENST00000568558 M0R2Z0 102 aa10.53□□□□□ -0.72
CLN3-236ENST00000568558 INSP01308 110 aa10.53□□□□□ -0.72
CLN3-236ENST00000568558 PRM2P04554 102 aa10.53□□□□□ -0.72
CLN3-236ENST00000568558 S100A7P31151 101 aa10.53□□□□□ -0.72
CLN3-236ENST00000568558 IGFL4Q6B9Z1 124 aa10.53□□□□□ -0.72
CLN3-236ENST00000568558 ACOT7LQ6ZUV0 252 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms