RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 C7orf66A4D0T2 115 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 C5orf51A6NDU8 294 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 FNDC10F2Z333 226 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 TCTAP57738 103 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 PSG9Q00887 426 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 TEPPQ6URK8 271 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 Q6ZTC4 211 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 S100A7AQ86SG5 101 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 ZNF431Q8TF32 576 aaPredicted RBP14.95□□□□□ -0.02
CLN3-219ENST00000565778 SEC22CQ9BRL7 303 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 CCDC32Q9BV29 185 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 SLC35B3Q9H1N7 401 aa14.95□□□□□ -0.02
CLN3-219ENST00000565778 RCL1Q9Y2P8 373 aaKnown RBP14.95□□□□□ -0.02
CLN3-219ENST00000565778 TRAV10A0A0B4J240 114 aa14.94□□□□□ -0.02
CLN3-219ENST00000565778 H3BRN7 92 aa14.94□□□□□ -0.02
CLN3-219ENST00000565778 H2AFB2P0C5Z0 115 aa14.94□□□□□ -0.02
CLN3-219ENST00000565778 PLP1P60201 277 aa14.94□□□□□ -0.02
CLN3-219ENST00000565778 ZNF705AQ6ZN79 300 aaPredicted RBP14.94□□□□□ -0.02
CLN3-219ENST00000565778 C17orf77Q96MU5 243 aa14.94□□□□□ -0.02
CLN3-219ENST00000565778 SHANK2-AS3Q9BTD1 123 aa14.94□□□□□ -0.02
CLN3-219ENST00000565778 ARL6Q9H0F7 186 aa14.94□□□□□ -0.02
CLN3-219ENST00000565778 LSM5Q9Y4Y9 91 aaKnown RBP14.94□□□□□ -0.02
CLN3-219ENST00000565778 FAM240BA0A1B0GVZ2 78 aa14.93□□□□□ -0.02
CLN3-219ENST00000565778 SMIM9A6NGZ8 99 aa14.93□□□□□ -0.02
CLN3-219ENST00000565778 GOSR2O14653 212 aa14.93□□□□□ -0.02
CLN3-219ENST00000565778 BCAP31P51572 246 aa14.93□□□□□ -0.02
CLN3-219ENST00000565778 ARL16Q0P5N6 197 aa14.93□□□□□ -0.02
CLN3-219ENST00000565778 IGFL4Q6B9Z1 124 aa14.93□□□□□ -0.02
CLN3-219ENST00000565778 C12orf45Q8N5I9 185 aaPredicted RBP14.93□□□□□ -0.02
CLN3-219ENST00000565778 ZNF709Q8N972 641 aa14.93□□□□□ -0.02
CLN3-219ENST00000565778 NEU1Q99519 415 aa14.93□□□□□ -0.02
CLN3-219ENST00000565778 CELA1Q9UNI1 258 aa14.93□□□□□ -0.02
CLN3-219ENST00000565778 RPL7P18124 248 aaKnown RBP14.92□□□□□ -0.02
CLN3-219ENST00000565778 EMP1P54849 157 aa14.92□□□□□ -0.02
CLN3-219ENST00000565778 SLC38A11Q08AI6 406 aa14.92□□□□□ -0.02
CLN3-219ENST00000565778 ZNF767PQ75MW2 155 aa14.92□□□□□ -0.02
CLN3-219ENST00000565778 RPP25LQ8N5L8 163 aaKnown RBP14.92□□□□□ -0.02
CLN3-219ENST00000565778 UHRF2Q96PU4 802 aa14.92□□□□□ -0.02
CLN3-219ENST00000565778 GGACTQ9BVM4 153 aa14.92□□□□□ -0.02
CLN3-219ENST00000565778 APLNQ9ULZ1 77 aa14.92□□□□□ -0.02
CLN3-219ENST00000565778 ZNF705FA8MVS1 300 aaPredicted RBP14.91□□□□□ -0.02
CLN3-219ENST00000565778 DEDDO75618 318 aa14.91□□□□□ -0.02
CLN3-219ENST00000565778 ZNF705DP0CH99 300 aaPredicted RBP14.91□□□□□ -0.02
CLN3-219ENST00000565778 ZNF705BP0CI00 300 aaPredicted RBP14.91□□□□□ -0.02
CLN3-219ENST00000565778 C12orf74Q32Q52 190 aa14.91□□□□□ -0.02
CLN3-219ENST00000565778 MZT2BQ6NZ67 158 aa14.91□□□□□ -0.02
CLN3-219ENST00000565778 LRRC20Q8TCA0 184 aa14.91□□□□□ -0.02
CLN3-219ENST00000565778 S100ZQ8WXG8 99 aa14.91□□□□□ -0.02
CLN3-219ENST00000565778 C2orf50Q96LR7 162 aa14.91□□□□□ -0.02
CLN3-219ENST00000565778 GOLT1BQ9Y3E0 138 aa14.91□□□□□ -0.02
CLN3-219ENST00000565778 TMEM189A5PLL7 270 aa14.9□□□□□ -0.02
CLN3-219ENST00000565778 K7EPK0 472 aa14.9□□□□□ -0.02
CLN3-219ENST00000565778 AGPAT2O15120 278 aa14.9□□□□□ -0.02
CLN3-219ENST00000565778 DUSP14O95147 198 aaKnown RBP14.9□□□□□ -0.02
CLN3-219ENST00000565778 CAV2P51636 162 aa14.9□□□□□ -0.02
CLN3-219ENST00000565778 PATE2Q6UY27 113 aa14.9□□□□□ -0.02
CLN3-219ENST00000565778 LINC00299Q6ZSB3 139 aa14.9□□□□□ -0.02
CLN3-219ENST00000565778 RNF182Q8N6D2 247 aa14.9□□□□□ -0.02
CLN3-219ENST00000565778 ARV1Q9H2C2 271 aa14.9□□□□□ -0.02
CLN3-219ENST00000565778 RNF24Q9Y225 148 aa14.9□□□□□ -0.02
CLN3-219ENST00000565778 RFNGQ9Y644 331 aa14.9□□□□□ -0.02
CLN3-219ENST00000565778 DEFB131BA0A096LNP1 70 aa14.89□□□□□ -0.03
CLN3-219ENST00000565778 TRAV8-2A0A0B4J237 113 aa14.89□□□□□ -0.03
CLN3-219ENST00000565778 SPART-AS1P0CW21 52 aa14.89□□□□□ -0.03
CLN3-219ENST00000565778 PXDC1Q5TGL8 231 aa14.89□□□□□ -0.03
CLN3-219ENST00000565778 ZNF546Q86UE3 836 aa14.89□□□□□ -0.03
CLN3-219ENST00000565778 PVALBP20472 110 aaPredicted RBP14.88□□□□□ -0.03
CLN3-219ENST00000565778 C1orf158Q8N1D5 194 aa14.88□□□□□ -0.03
CLN3-219ENST00000565778 ZNF738Q8NE65 137 aa14.88□□□□□ -0.03
CLN3-219ENST00000565778 EPPK1P58107 5090 aaKnown RBP14.88□□□□□ -0.03
CLN3-219ENST00000565778 IGHV4-4A0A075B6R2 117 aa14.87□□□□□ -0.03
CLN3-219ENST00000565778 FAM24AA6NFZ4 105 aa14.87□□□□□ -0.03
CLN3-219ENST00000565778 CST7O76096 145 aa14.87□□□□□ -0.03
CLN3-219ENST00000565778 HBE1P02100 147 aa14.87□□□□□ -0.03
CLN3-219ENST00000565778 CNN1P51911 297 aaKnown RBP14.87□□□□□ -0.03
CLN3-219ENST00000565778 RAB31Q13636 194 aa14.87□□□□□ -0.03
CLN3-219ENST00000565778 LINC00305Q7Z4B0 112 aa14.87□□□□□ -0.03
CLN3-219ENST00000565778 TMEM208Q9BTX3 173 aa14.87□□□□□ -0.03
CLN3-219ENST00000565778 A8MTW9 85 aa14.86□□□□□ -0.03
CLN3-219ENST00000565778 S100A10P60903 97 aa14.86□□□□□ -0.03
CLN3-219ENST00000565778 AMTNQ6UX39 209 aa14.86□□□□□ -0.03
CLN3-219ENST00000565778 IGF2BP2-AS1Q96M15 143 aa14.86□□□□□ -0.03
CLN3-219ENST00000565778 MGST2Q99735 147 aa14.86□□□□□ -0.03
CLN3-219ENST00000565778 RNF126Q9BV68 326 aa14.86□□□□□ -0.03
CLN3-219ENST00000565778 A0A087X0K7 114 aa14.85□□□□□ -0.03
CLN3-219ENST00000565778 COX7A2P2O60397 106 aa14.85□□□□□ -0.03
CLN3-219ENST00000565778 AMBPP02760 352 aa14.85□□□□□ -0.03
CLN3-219ENST00000565778 CAMLGP49069 296 aa14.85□□□□□ -0.03
CLN3-219ENST00000565778 ASAH1Q13510 395 aa14.85□□□□□ -0.03
CLN3-219ENST00000565778 PSG3Q16557 428 aa14.85□□□□□ -0.03
CLN3-219ENST00000565778 RRN3P1Q2M238 152 aa14.85□□□□□ -0.03
CLN3-219ENST00000565778 OR11H7Q8NGC8 314 aa14.85□□□□□ -0.03
CLN3-219ENST00000565778 PPP1R14DQ9NXH3 145 aa14.85□□□□□ -0.03
CLN3-219ENST00000565778 LOC102723971A0A1B0GUV8 181 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 M0R2Z0 102 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 CXCL3P19876 107 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 RHOBP62745 196 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 PRR20EP86478 221 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 PRR20CP86479 221 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms