RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.14■□□□□ 0.17
CLN3-215ENST00000565236 OR10P1Q8NGE3 313 aa16.14■□□□□ 0.17
CLN3-215ENST00000565236 C17orf77Q96MU5 243 aa16.14■□□□□ 0.17
CLN3-215ENST00000565236 RNF126Q9BV68 326 aa16.14■□□□□ 0.17
CLN3-215ENST00000565236 SCRT1Q9BWW7 348 aa16.14■□□□□ 0.17
CLN3-215ENST00000565236 SLC25A39Q9BZJ4 359 aaPredicted RBP16.14■□□□□ 0.17
CLN3-215ENST00000565236 NPVFQ9HCQ7 196 aa16.14■□□□□ 0.17
CLN3-215ENST00000565236 NDUFA13Q9P0J0 144 aa16.14■□□□□ 0.17
CLN3-215ENST00000565236 HIGD1AQ9Y241 93 aa16.14■□□□□ 0.17
CLN3-215ENST00000565236 GOLT1BQ9Y3E0 138 aa16.14■□□□□ 0.17
CLN3-215ENST00000565236 RFNGQ9Y644 331 aa16.14■□□□□ 0.17
CLN3-215ENST00000565236 CCNKO75909 580 aa16.13■□□□□ 0.17
CLN3-215ENST00000565236 SPART-AS1P0CW21 52 aa16.13■□□□□ 0.17
CLN3-215ENST00000565236 TAS2R30P59541 319 aa16.13■□□□□ 0.17
CLN3-215ENST00000565236 PRR20EP86478 221 aa16.13■□□□□ 0.17
CLN3-215ENST00000565236 PRR20CP86479 221 aa16.13■□□□□ 0.17
CLN3-215ENST00000565236 PRR20DP86480 221 aa16.13■□□□□ 0.17
CLN3-215ENST00000565236 PRR20BP86481 221 aa16.13■□□□□ 0.17
CLN3-215ENST00000565236 PRR20AP86496 221 aa16.13■□□□□ 0.17
CLN3-215ENST00000565236 TMEM14EPQ6UXP3 125 aa16.13■□□□□ 0.17
CLN3-215ENST00000565236 ZBTB8BQ8NAP8 495 aaPredicted RBP16.13■□□□□ 0.17
CLN3-215ENST00000565236 SHANK2-AS3Q9BTD1 123 aa16.13■□□□□ 0.17
CLN3-215ENST00000565236 MGAT4CQ9UBM8 478 aa16.13■□□□□ 0.17
CLN3-215ENST00000565236 H3BRN7 92 aa16.12■□□□□ 0.17
CLN3-215ENST00000565236 PLA2G10O15496 165 aa16.12■□□□□ 0.17
CLN3-215ENST00000565236 OR5G3P0C626 314 aa16.12■□□□□ 0.17
CLN3-215ENST00000565236 LINC00869P0C866 280 aa16.12■□□□□ 0.17
CLN3-215ENST00000565236 FGL1Q08830 312 aa16.12■□□□□ 0.17
CLN3-215ENST00000565236 S100A7AQ86SG5 101 aa16.12■□□□□ 0.17
CLN3-215ENST00000565236 C20orf85Q9H1P6 137 aa16.12■□□□□ 0.17
CLN3-215ENST00000565236 FNDC10F2Z333 226 aa16.11■□□□□ 0.17
CLN3-215ENST00000565236 LYRM1O43325 122 aa16.11■□□□□ 0.17
CLN3-215ENST00000565236 TSC22D2O75157 780 aa16.11■□□□□ 0.17
CLN3-215ENST00000565236 RPL7P18124 248 aaKnown RBP16.11■□□□□ 0.17
CLN3-215ENST00000565236 DNAH10Q8IVF4 4471 aa16.11■□□□□ 0.17
CLN3-215ENST00000565236 PLP1P60201 277 aa16.1■□□□□ 0.17
CLN3-215ENST00000565236 ZNF846Q147U1 533 aa16.1■□□□□ 0.17
CLN3-215ENST00000565236 IGFL4Q6B9Z1 124 aa16.1■□□□□ 0.17
CLN3-215ENST00000565236 TEPPQ6URK8 271 aa16.1■□□□□ 0.17
CLN3-215ENST00000565236 C1orf158Q8N1D5 194 aa16.1■□□□□ 0.17
CLN3-215ENST00000565236 RCL1Q9Y2P8 373 aaKnown RBP16.1■□□□□ 0.17
CLN3-215ENST00000565236 DUSP14O95147 198 aaKnown RBP16.09■□□□□ 0.17
CLN3-215ENST00000565236 HBE1P02100 147 aa16.09■□□□□ 0.17
CLN3-215ENST00000565236 MBPP02686 304 aaPredicted RBP16.09■□□□□ 0.17
CLN3-215ENST00000565236 TCRBP04435 133 aa16.09■□□□□ 0.17
CLN3-215ENST00000565236 RNF182Q8N6D2 247 aa16.09■□□□□ 0.17
CLN3-215ENST00000565236 UHRF2Q96PU4 802 aa16.09■□□□□ 0.17
CLN3-215ENST00000565236 ARL6Q9H0F7 186 aa16.09■□□□□ 0.17
CLN3-215ENST00000565236 TRAV8-2A0A0B4J237 113 aa16.08■□□□□ 0.16
CLN3-215ENST00000565236 C7orf66A4D0T2 115 aa16.08■□□□□ 0.16
CLN3-215ENST00000565236 A8MTW9 85 aa16.08■□□□□ 0.16
CLN3-215ENST00000565236 GOSR2O14653 212 aa16.08■□□□□ 0.16
CLN3-215ENST00000565236 AMBPP02760 352 aa16.08■□□□□ 0.16
CLN3-215ENST00000565236 TMEM208Q9BTX3 173 aa16.08■□□□□ 0.16
CLN3-215ENST00000565236 TRAV6A0A075B6T7 132 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 TEX48A0A1B0GUV7 120 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 FAM25EA8MYX2 175 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 K7EPK0 472 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 L7N2F9 121 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 CCSO14618 274 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 CNN1P51911 297 aaKnown RBP16.07■□□□□ 0.16
CLN3-215ENST00000565236 VAMP2P63027 116 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 SLC38A11Q08AI6 406 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 RRN3P1Q2M238 152 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 AMTNQ6UX39 209 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 ZNF738Q8NE65 137 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 LRRC20Q8TCA0 184 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 IGF2BP2-AS1Q96M15 143 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 NDUFAF3Q9BU61 184 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 GGACTQ9BVM4 153 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 DKK2Q9UBU2 259 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 RNF24Q9Y225 148 aa16.07■□□□□ 0.16
CLN3-215ENST00000565236 DNAH6Q9C0G6 4158 aa16.06■□□□□ 0.16
CLN3-215ENST00000565236 LOC102723971A0A1B0GUV8 181 aa16.06■□□□□ 0.16
CLN3-215ENST00000565236 ARL16Q0P5N6 197 aa16.06■□□□□ 0.16
CLN3-215ENST00000565236 PXDC1Q5TGL8 231 aa16.06■□□□□ 0.16
CLN3-215ENST00000565236 FAM222AQ5U5X8 452 aa16.06■□□□□ 0.16
CLN3-215ENST00000565236 NIPSNAP3BQ9BS92 247 aa16.06■□□□□ 0.16
CLN3-215ENST00000565236 NUDT15Q9NV35 164 aa16.06■□□□□ 0.16
CLN3-215ENST00000565236 PATE2Q6UY27 113 aa16.05■□□□□ 0.16
CLN3-215ENST00000565236 ZNF546Q86UE3 836 aa16.05■□□□□ 0.16
CLN3-215ENST00000565236 OR11H7Q8NGC8 314 aa16.05■□□□□ 0.16
CLN3-215ENST00000565236 ZNF431Q8TF32 576 aaPredicted RBP16.05■□□□□ 0.16
CLN3-215ENST00000565236 ARV1Q9H2C2 271 aa16.05■□□□□ 0.16
CLN3-215ENST00000565236 LSM5Q9Y4Y9 91 aaKnown RBP16.05■□□□□ 0.16
CLN3-215ENST00000565236 C5orf51A6NDU8 294 aa16.04■□□□□ 0.16
CLN3-215ENST00000565236 AGPAT2O15120 278 aa16.04■□□□□ 0.16
CLN3-215ENST00000565236 SPINK13Q1W4C9 94 aa16.04■□□□□ 0.16
CLN3-215ENST00000565236 YTHDF2Q9Y5A9 579 aaKnown RBP16.04■□□□□ 0.16
CLN3-215ENST00000565236 A0A087X0K7 114 aa16.03■□□□□ 0.16
CLN3-215ENST00000565236 M0R2Z0 102 aa16.03■□□□□ 0.16
CLN3-215ENST00000565236 P0DMU3 169 aa16.03■□□□□ 0.16
CLN3-215ENST00000565236 FAM231AP0DMU4 169 aa16.03■□□□□ 0.16
CLN3-215ENST00000565236 FAM231CP0DMU5 169 aa16.03■□□□□ 0.16
CLN3-215ENST00000565236 BCAP31P51572 246 aa16.03■□□□□ 0.16
CLN3-215ENST00000565236 C12orf45Q8N5I9 185 aaPredicted RBP16.03■□□□□ 0.16
CLN3-215ENST00000565236 SEC22CQ9BRL7 303 aa16.03■□□□□ 0.16
CLN3-215ENST00000565236 CCDC32Q9BV29 185 aa16.03■□□□□ 0.16
CLN3-215ENST00000565236 PLA2G2EQ9NZK7 142 aa16.03■□□□□ 0.16
CLN3-215ENST00000565236 INSP01308 110 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms