RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 TMEM231Q9H6L2 316 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 MAP6D1Q9H9H5 199 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 RBMY1BA6NDE4 496 aaKnown RBP7.26□□□□□ -1.25
CLK3-208ENST00000562626 RBMY1EA6NEQ0 496 aaKnown RBP7.26□□□□□ -1.25
CLK3-208ENST00000562626 HMSDA8MTL9 139 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 H3BTX0 84 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 RBMY1DP0C7P1 496 aaKnown RBP7.26□□□□□ -1.25
CLK3-208ENST00000562626 FRMD6-AS1P0C7T7 363 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 ZNF688P0C7X2 276 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 IGHV4-30-4P0DP06 118 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 ATP6V0CP27449 155 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 RAB31Q13636 194 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 DEFB121Q5J5C9 76 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 FFAR4Q5NUL3 377 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 C10orf113Q5VZT2 155 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 MIR17HGQ75NE6 70 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 OR8I2Q8N0Y5 310 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 KCNRGQ8N5I3 272 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 INO80EQ8NBZ0 244 aaPredicted RBP7.26□□□□□ -1.25
CLK3-208ENST00000562626 C20orf173Q96LM9 149 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 PARD6GQ9BYG4 376 aaPredicted RBP7.26□□□□□ -1.25
CLK3-208ENST00000562626 MFFQ9GZY8 342 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 SEPSECSQ9HD40 501 aaKnown RBP7.26□□□□□ -1.25
CLK3-208ENST00000562626 DNAJC4Q9NNZ3 241 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 PLA2G2EQ9NZK7 142 aa7.26□□□□□ -1.25
CLK3-208ENST00000562626 TRAV8-2A0A0B4J237 113 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 HELTA6NFD8 242 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 OR4C46A6NHA9 309 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 OR11H12B2RN74 326 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 H3BQ15 152 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 IFNA5P01569 189 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 HLA-DMBP28068 263 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 NUP62P37198 522 aaPredicted RBP7.25□□□□□ -1.25
CLK3-208ENST00000562626 RAB2AP61019 212 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 LGALSLQ3ZCW2 172 aaPredicted RBP7.25□□□□□ -1.25
CLK3-208ENST00000562626 C1orf194Q5T5A4 169 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 PXDC1Q5TGL8 231 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 LINC00322Q6ZN03 302 aaPredicted RBP7.25□□□□□ -1.25
CLK3-208ENST00000562626 AKAP14Q86UN6 197 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 GTSCR1Q86UQ5 136 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 SCGB1C1Q8TD33 95 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 NARS2Q96I59 477 aaKnown RBP7.25□□□□□ -1.25
CLK3-208ENST00000562626 FAM167A-AS1Q96KT0 104 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 SLC25A2Q9BXI2 301 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 SRD5A3Q9H8P0 318 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 NRN1Q9NPD7 142 aa7.25□□□□□ -1.25
CLK3-208ENST00000562626 TRAV2A0A0B4J234 112 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 DNASE2O00115 360 aaPredicted RBP7.24□□□□□ -1.25
CLK3-208ENST00000562626 SLC17A3O00476 420 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 C1QBP02746 253 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 IGLC2P0DOY2 106 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 PYYP10082 97 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 BMI1P35226 326 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 DEFB131AP59861 70 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 ZNF345Q14585 488 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 GDF5OSQ5U4N7 250 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 FAM78BQ5VT40 261 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 Q6ZRG5 221 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 SSX7Q7RTT5 188 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 ZNF503Q96F45 646 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 FAM210AQ96ND0 272 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 ASCL2Q99929 193 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 ZMAT5Q9UDW3 170 aaKnown RBP7.24□□□□□ -1.25
CLK3-208ENST00000562626 TIMM9Q9Y5J7 89 aa7.24□□□□□ -1.25
CLK3-208ENST00000562626 ELOA3CA0A087WX78 387 aaPredicted RBP7.23□□□□□ -1.25
CLK3-208ENST00000562626 A0A087X0K7 114 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 KNCNA6PVL3 124 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 A8MZ25 164 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 C17orf112F2Z3M2 114 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 CD5P06127 495 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 ZNF266Q14584 549 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 PSMG4Q5JS54 123 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 TMUB2Q71RG4 321 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 SBSPONQ8IVN8 264 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 RNF182Q8N6D2 247 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 ZNF709Q8N972 641 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 OR1L4Q8NGR5 311 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 GATAD1Q8WUU5 269 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 PFDN5Q99471 154 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 PSMG3Q9BT73 122 aaPredicted RBP7.23□□□□□ -1.25
CLK3-208ENST00000562626 ZNF586Q9NXT0 402 aa7.23□□□□□ -1.25
CLK3-208ENST00000562626 F6UB75 175 aa7.22□□□□□ -1.25
CLK3-208ENST00000562626 HMGB3O15347 200 aaKnown RBP7.22□□□□□ -1.25
CLK3-208ENST00000562626 BCL2L11O43521 198 aa7.22□□□□□ -1.25
CLK3-208ENST00000562626 RPL35AP18077 110 aaKnown RBP7.22□□□□□ -1.25
CLK3-208ENST00000562626 RPL7P18124 248 aaKnown RBP7.22□□□□□ -1.25
CLK3-208ENST00000562626 GALR1P47211 349 aa7.22□□□□□ -1.25
CLK3-208ENST00000562626 NKX2-5P52952 324 aaPredicted RBP7.22□□□□□ -1.25
CLK3-208ENST00000562626 PAFAH1B2P68402 229 aa7.22□□□□□ -1.25
CLK3-208ENST00000562626 FAM122CQ6P4D5 195 aa7.22□□□□□ -1.25
CLK3-208ENST00000562626 C9orf62Q8N4C0 152 aa7.22□□□□□ -1.25
CLK3-208ENST00000562626 OR2G3Q8NGZ4 309 aa7.22□□□□□ -1.25
CLK3-208ENST00000562626 ARPC5LQ9BPX5 153 aa7.22□□□□□ -1.25
CLK3-208ENST00000562626 FUT9Q9Y231 359 aa7.22□□□□□ -1.25
CLK3-208ENST00000562626 A0A0D9SG52 128 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 NDUFB4O95168 129 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 ATF4P18848 351 aaPredicted RBP7.21□□□□□ -1.26
CLK3-208ENST00000562626 ZNF726P1Q15940 193 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 HAGHQ16775 308 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 RPP25LQ8N5L8 163 aaKnown RBP7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 210.4 ms