RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 DLL1O00548 723 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 HLA-DQA1P01909 254 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 GDF5OSQ5U4N7 250 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 MTURNQ8N3F0 131 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 TPSG1Q9NRR2 321 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 ZGRF1Q86YA3 2104 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 IGHV3-72A0A0B4J1Y9 119 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 PSMB11A5LHX3 300 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 ORM2P19652 201 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 TCTEX1D4Q5JR98 221 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 C10orf113Q5VZT2 155 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 PATE2Q6UY27 113 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 OR8B3Q8NGG8 313 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 OR10X1Q8NGY0 326 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 FLYWCH2Q96CP2 140 aaKnown RBP9.11□□□□□ -0.95
CUX1-218ENST00000560541 IZUMO1RA6ND01 250 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 C9orf118A6NHY6 69 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 B9A039 149 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 FCN3O75636 299 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 PRB4P10163 310 aaPredicted RBP9.11□□□□□ -0.95
CUX1-218ENST00000560541 LINC00173Q6ZV60 143 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 SH2D6Q7Z4S9 175 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 C18orf32Q8TCD1 76 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 UFC1Q9Y3C8 167 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 RELNP78509 3460 aa9.11□□□□□ -0.95
CUX1-218ENST00000560541 PEX7O00628 323 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 HIST1H1EP10412 219 aaKnown RBP9.1□□□□□ -0.95
CUX1-218ENST00000560541 CD24P25063 80 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 CD40P25942 277 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 DLX1P56177 255 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 HCP5Q6MZN7 132 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 ZNF833PQ6ZTB9 187 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 ZNF329Q86UD4 541 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 ZADH2Q8N4Q0 377 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 RBMXL3Q8N7X1 1067 aaKnown RBP9.1□□□□□ -0.95
CUX1-218ENST00000560541 NUP35Q8NFH5 326 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 RITA1Q96K30 269 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 SAP30LQ9HAJ7 183 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 CGB1A6NKQ9 187 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 SCGB2A1O75556 95 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 LINC00305Q7Z4B0 112 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 SPACA3Q8IXA5 215 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 OSR1Q8TAX0 266 aaPredicted RBP9.1□□□□□ -0.95
CUX1-218ENST00000560541 LINC00312Q9Y6C7 94 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 K7EM74 188 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 FAM87AP0C7U9 286 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 SMIM17P0DL12 118 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 TM4SF20Q53R12 229 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 CCL17Q92583 94 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 ZNF714Q96N38 554 aa9.1□□□□□ -0.95
CUX1-218ENST00000560541 MRPL32Q9BYC8 188 aaKnown RBP9.1□□□□□ -0.95
CUX1-218ENST00000560541 APC2O95996 2303 aa9.09□□□□□ -0.95
CUX1-218ENST00000560541 HIGD1CA8MV81 97 aa9.09□□□□□ -0.95
CUX1-218ENST00000560541 TM4SF5O14894 197 aa9.09□□□□□ -0.95
CUX1-218ENST00000560541 TMEM97Q5BJF2 176 aa9.09□□□□□ -0.95
CUX1-218ENST00000560541 TMEM200BQ69YZ2 307 aa9.09□□□□□ -0.95
CUX1-218ENST00000560541 ZFHX2Q9C0A1 2572 aaPredicted RBP9.09□□□□□ -0.95
CUX1-218ENST00000560541 SVEP1Q4LDE5 3571 aa9.09□□□□□ -0.95
CUX1-218ENST00000560541 IGKV1D-37A0A075B6S9 117 aa9.09□□□□□ -0.95
CUX1-218ENST00000560541 ENSAO43768 121 aaKnown RBP9.09□□□□□ -0.95
CUX1-218ENST00000560541 WFDC2Q14508 124 aa9.09□□□□□ -0.95
CUX1-218ENST00000560541 KIR3DS1Q14943 382 aa9.09□□□□□ -0.95
CUX1-218ENST00000560541 TBR1Q16650 682 aa9.09□□□□□ -0.95
CUX1-218ENST00000560541 FAM110AQ9BQ89 295 aa9.09□□□□□ -0.95
CUX1-218ENST00000560541 CUL9Q8IWT3 2517 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 VWC2LB2RUY7 222 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 RPL32P62910 135 aaKnown RBP9.08□□□□□ -0.96
CUX1-218ENST00000560541 LYPD2Q6UXB3 125 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 TMEM116Q8NCL8 245 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 OR5AN1Q8NGI8 311 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 VSTM2AQ8TAG5 236 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 FXYD5Q96DB9 178 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 LINC00574Q9H8X3 128 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 SLC25A5P05141 298 aaKnown RBP9.08□□□□□ -0.96
CUX1-218ENST00000560541 INSL3P51460 131 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 MRPL16Q9NX20 251 aaKnown RBP9.08□□□□□ -0.96
CUX1-218ENST00000560541 A0A1W2PPI3 338 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 TCRBV4S1A1TA0A5B7 111 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 HIST1H1AQ02539 215 aaPredicted RBP9.08□□□□□ -0.96
CUX1-218ENST00000560541 ETDBQ3ZM63 59 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 OR4C13Q8NGP0 309 aa9.08□□□□□ -0.96
CUX1-218ENST00000560541 SPAG8Q99932 426 aaPredicted RBP9.08□□□□□ -0.96
CUX1-218ENST00000560541 ZNF318Q5VUA4 2279 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 PGPA6NDG6 321 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 SPINK8P0C7L1 97 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 FOXA3P55318 350 aaPredicted RBP9.07□□□□□ -0.96
CUX1-218ENST00000560541 COX19Q49B96 90 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 TEX36Q5VZQ5 186 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 SSX8Q7RTT4 187 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 RALYQ9UKM9 306 aaKnown RBP9.07□□□□□ -0.96
CUX1-218ENST00000560541 LINC00322Q6ZN03 302 aaPredicted RBP9.07□□□□□ -0.96
CUX1-218ENST00000560541 PDPNQ86YL7 162 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 BPIFA4PQ86YQ2 179 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 OR1L4Q8NGR5 311 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 MBD6Q96DN6 1003 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 SSUH2Q9Y2M2 353 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 LRBAP50851 2863 aa9.07□□□□□ -0.96
CUX1-218ENST00000560541 OR11H12B2RN74 326 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 OR11H1Q8NG94 326 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 OR11H2Q8NH07 326 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms