RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 OR1L4Q8NGR5 311 aa16.24■□□□□ 0.19
SNX1-210ENST00000560260 DCANP1Q8TF63 244 aa16.24■□□□□ 0.19
SNX1-210ENST00000560260 DNAJC4Q9NNZ3 241 aa16.24■□□□□ 0.19
SNX1-210ENST00000560260 KCNIP2Q9NS61 270 aa16.24■□□□□ 0.19
SNX1-210ENST00000560260 K7EQG2 157 aa16.23■□□□□ 0.19
SNX1-210ENST00000560260 MRPS12O15235 138 aaKnown RBP16.23■□□□□ 0.19
SNX1-210ENST00000560260 ATP6V0CP27449 155 aa16.23■□□□□ 0.19
SNX1-210ENST00000560260 FFAR4Q5NUL3 377 aa16.23■□□□□ 0.19
SNX1-210ENST00000560260 SPATA31B1PQ5VZV4 182 aa16.23■□□□□ 0.19
SNX1-210ENST00000560260 GTSCR1Q86UQ5 136 aa16.23■□□□□ 0.19
SNX1-210ENST00000560260 MRAPQ8TCY5 172 aa16.23■□□□□ 0.19
SNX1-210ENST00000560260 PFDN5Q99471 154 aa16.23■□□□□ 0.19
SNX1-210ENST00000560260 SH3BGRL3Q9H299 93 aa16.23■□□□□ 0.19
SNX1-210ENST00000560260 UBQLN2Q9UHD9 624 aa16.23■□□□□ 0.19
SNX1-210ENST00000560260 TRAV2A0A0B4J234 112 aa16.22■□□□□ 0.19
SNX1-210ENST00000560260 TRAV5A0A0B4J249 113 aa16.22■□□□□ 0.19
SNX1-210ENST00000560260 NRN1Q9NPD7 142 aa16.22■□□□□ 0.19
SNX1-210ENST00000560260 TIMM9Q9Y5J7 89 aa16.22■□□□□ 0.19
SNX1-210ENST00000560260 DNASE2O00115 360 aaPredicted RBP16.21■□□□□ 0.19
SNX1-210ENST00000560260 GATAD1Q8WUU5 269 aa16.21■□□□□ 0.19
SNX1-210ENST00000560260 SOCS3O14543 225 aa16.2■□□□□ 0.18
SNX1-210ENST00000560260 PAFAH1B2P68402 229 aa16.2■□□□□ 0.18
SNX1-210ENST00000560260 DEFB125Q8N687 156 aa16.2■□□□□ 0.18
SNX1-210ENST00000560260 ARPC5LQ9BPX5 153 aa16.2■□□□□ 0.18
SNX1-210ENST00000560260 MAP6D1Q9H9H5 199 aa16.2■□□□□ 0.18
SNX1-210ENST00000560260 SEPSECSQ9HD40 501 aaKnown RBP16.2■□□□□ 0.18
SNX1-210ENST00000560260 BORCS7-ASMTA0A0B4J1R7 106 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 A0A0D9SG52 128 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 TAAR5O14804 337 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 BCL2L11O43521 198 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 S100A7P31151 101 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 GALR1P47211 349 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 MIR17HGQ75NE6 70 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 OR2G3Q8NGZ4 309 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 CITED4Q96RK1 184 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 PSMG3Q9BT73 122 aaPredicted RBP16.19■□□□□ 0.18
SNX1-210ENST00000560260 OR11H12B2RN74 326 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 IGHV4-30-4P0DP06 118 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 RPL7P18124 248 aaKnown RBP16.19■□□□□ 0.18
SNX1-210ENST00000560260 RAB2AP61019 212 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 ZNF124Q15973 351 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 LGALSLQ3ZCW2 172 aaPredicted RBP16.19■□□□□ 0.18
SNX1-210ENST00000560260 FAM78BQ5VT40 261 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 TMUB2Q71RG4 321 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 S100A7AQ86SG5 101 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 GPR82Q96P67 336 aa16.19■□□□□ 0.18
SNX1-210ENST00000560260 EIF3GO75821 320 aaKnown RBP eCLIP16.18■□□□□ 0.18
SNX1-210ENST00000560260 ZNF688P0C7X2 276 aa16.18■□□□□ 0.18
SNX1-210ENST00000560260 SLC25A2Q9BXI2 301 aa16.18■□□□□ 0.18
SNX1-210ENST00000560260 A0A087X0K7 114 aa16.17■□□□□ 0.18
SNX1-210ENST00000560260 JTBO76095 146 aa16.17■□□□□ 0.18
SNX1-210ENST00000560260 SNRPCP09234 159 aaKnown RBP16.17■□□□□ 0.18
SNX1-210ENST00000560260 DEFB121Q5J5C9 76 aa16.17■□□□□ 0.18
SNX1-210ENST00000560260 APRG1Q8IVJ8 170 aa16.17■□□□□ 0.18
SNX1-210ENST00000560260 FAM167A-AS1Q96KT0 104 aa16.17■□□□□ 0.18
SNX1-210ENST00000560260 HYLS1Q96M11 299 aa16.17■□□□□ 0.18
SNX1-210ENST00000560260 FAM110AQ9BQ89 295 aa16.17■□□□□ 0.18
SNX1-210ENST00000560260 FUT9Q9Y231 359 aa16.17■□□□□ 0.18
SNX1-210ENST00000560260 DEFB131AP59861 70 aa16.16■□□□□ 0.18
SNX1-210ENST00000560260 SRD5A3Q9H8P0 318 aa16.16■□□□□ 0.18
SNX1-210ENST00000560260 TRAV8-2A0A0B4J237 113 aa16.15■□□□□ 0.18
SNX1-210ENST00000560260 KANTRA0A1W2PQU2 76 aa16.15■□□□□ 0.18
SNX1-210ENST00000560260 H3BTX0 84 aa16.15■□□□□ 0.18
SNX1-210ENST00000560260 IGLC2P0DOY2 106 aa16.15■□□□□ 0.18
SNX1-210ENST00000560260 ATF4P18848 351 aaPredicted RBP16.15■□□□□ 0.18
SNX1-210ENST00000560260 M6PRP20645 277 aa16.15■□□□□ 0.18
SNX1-210ENST00000560260 ZFP69Q49AA0 526 aa16.15■□□□□ 0.18
SNX1-210ENST00000560260 BPIFA4PQ86YQ2 179 aa16.15■□□□□ 0.18
SNX1-210ENST00000560260 C9orf62Q8N4C0 152 aa16.15■□□□□ 0.18
SNX1-210ENST00000560260 GNPNAT1Q96EK6 184 aaPredicted RBP16.15■□□□□ 0.18
SNX1-210ENST00000560260 MRPL32Q9BYC8 188 aaKnown RBP16.15■□□□□ 0.18
SNX1-210ENST00000560260 A8MZ25 164 aa16.14■□□□□ 0.17
SNX1-210ENST00000560260 H3BQ15 152 aa16.14■□□□□ 0.17
SNX1-210ENST00000560260 FRMD6-AS1P0C7T7 363 aa16.14■□□□□ 0.17
SNX1-210ENST00000560260 PYYP10082 97 aa16.14■□□□□ 0.17
SNX1-210ENST00000560260 ACOT6Q3I5F7 207 aaPredicted RBP16.14■□□□□ 0.17
SNX1-210ENST00000560260 C20orf173Q96LM9 149 aa16.14■□□□□ 0.17
SNX1-210ENST00000560260 ZNF471Q9BX82 626 aaPredicted RBP16.14■□□□□ 0.17
SNX1-210ENST00000560260 RNF24Q9Y225 148 aa16.14■□□□□ 0.17
SNX1-210ENST00000560260 HUWE1Q7Z6Z7 4374 aaKnown RBP16.13■□□□□ 0.17
SNX1-210ENST00000560260 PFDN1O60925 122 aa16.13■□□□□ 0.17
SNX1-210ENST00000560260 DEFB1P60022 68 aa16.13■□□□□ 0.17
SNX1-210ENST00000560260 PSMG4Q5JS54 123 aa16.13■□□□□ 0.17
SNX1-210ENST00000560260 IGFL4Q6B9Z1 124 aa16.13■□□□□ 0.17
SNX1-210ENST00000560260 FAM122CQ6P4D5 195 aa16.13■□□□□ 0.17
SNX1-210ENST00000560260 ZNF503Q96F45 646 aa16.13■□□□□ 0.17
SNX1-210ENST00000560260 TMEM14CQ9P0S9 112 aa16.13■□□□□ 0.17
SNX1-210ENST00000560260 RBMY1BA6NDE4 496 aaKnown RBP16.12■□□□□ 0.17
SNX1-210ENST00000560260 RBMY1EA6NEQ0 496 aaKnown RBP16.12■□□□□ 0.17
SNX1-210ENST00000560260 SLC17A3O00476 420 aa16.12■□□□□ 0.17
SNX1-210ENST00000560260 RBMY1DP0C7P1 496 aaKnown RBP16.12■□□□□ 0.17
SNX1-210ENST00000560260 SPP1P10451 314 aa16.12■□□□□ 0.17
SNX1-210ENST00000560260 PSMB3P49720 205 aa16.12■□□□□ 0.17
SNX1-210ENST00000560260 MEOX2P50222 304 aa16.12■□□□□ 0.17
SNX1-210ENST00000560260 NKX2-5P52952 324 aaPredicted RBP16.12■□□□□ 0.17
SNX1-210ENST00000560260 RHOBP62745 196 aa16.12■□□□□ 0.17
SNX1-210ENST00000560260 SERF2P84101 59 aa16.12■□□□□ 0.17
SNX1-210ENST00000560260 LINC00322Q6ZN03 302 aaPredicted RBP16.12■□□□□ 0.17
SNX1-210ENST00000560260 RPP25LQ8N5L8 163 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 125.7 ms