RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 DEFB131BA0A096LNP1 70 aa12.67□□□□□ -0.38
HDDC3-205ENST00000559898 IFNA21P01568 189 aa12.67□□□□□ -0.38
HDDC3-205ENST00000559898 MBPP02686 304 aaPredicted RBP12.67□□□□□ -0.38
HDDC3-205ENST00000559898 SNRPCP09234 159 aaKnown RBP12.67□□□□□ -0.38
HDDC3-205ENST00000559898 PSG9Q00887 426 aa12.67□□□□□ -0.38
HDDC3-205ENST00000559898 SLC38A11Q08AI6 406 aa12.67□□□□□ -0.38
HDDC3-205ENST00000559898 MITD1Q8WV92 249 aa12.67□□□□□ -0.38
HDDC3-205ENST00000559898 TMEM147Q9BVK8 224 aa12.67□□□□□ -0.38
HDDC3-205ENST00000559898 C20orf85Q9H1P6 137 aa12.67□□□□□ -0.38
HDDC3-205ENST00000559898 PFDN2Q9UHV9 154 aa12.67□□□□□ -0.38
HDDC3-205ENST00000559898 DNAH2Q9P225 4427 aa12.66□□□□□ -0.38
HDDC3-205ENST00000559898 HECTD4Q9Y4D8 3996 aa12.66□□□□□ -0.38
HDDC3-205ENST00000559898 TRAV6A0A075B6T7 132 aa12.66□□□□□ -0.38
HDDC3-205ENST00000559898 A8MTW9 85 aa12.66□□□□□ -0.38
HDDC3-205ENST00000559898 IL5P05113 134 aa12.66□□□□□ -0.38
HDDC3-205ENST00000559898 LINC00869P0C866 280 aa12.66□□□□□ -0.38
HDDC3-205ENST00000559898 GALR1P47211 349 aa12.66□□□□□ -0.38
HDDC3-205ENST00000559898 FGL1Q08830 312 aa12.66□□□□□ -0.38
HDDC3-205ENST00000559898 NEU1Q99519 415 aa12.66□□□□□ -0.38
HDDC3-205ENST00000559898 SHANK2-AS3Q9BTD1 123 aa12.66□□□□□ -0.38
HDDC3-205ENST00000559898 SLC45A2Q9UMX9 530 aa12.66□□□□□ -0.38
HDDC3-205ENST00000559898 C7orf66A4D0T2 115 aa12.65□□□□□ -0.38
HDDC3-205ENST00000559898 M0R2Z0 102 aa12.65□□□□□ -0.38
HDDC3-205ENST00000559898 LYRM1O43325 122 aa12.65□□□□□ -0.38
HDDC3-205ENST00000559898 CFDP00746 253 aaPredicted RBP12.65□□□□□ -0.38
HDDC3-205ENST00000559898 DLK1P80370 383 aa12.65□□□□□ -0.38
HDDC3-205ENST00000559898 EBLN2Q6P2I7 272 aa12.65□□□□□ -0.38
HDDC3-205ENST00000559898 CLUHP3Q96NS8 147 aa12.65□□□□□ -0.38
HDDC3-205ENST00000559898 C7orf50Q9BRJ6 194 aaKnown RBP12.65□□□□□ -0.38
HDDC3-205ENST00000559898 RPRMQ9NS64 109 aa12.65□□□□□ -0.38
HDDC3-205ENST00000559898 DNAH17Q9UFH2 4485 aa12.64□□□□□ -0.39
HDDC3-205ENST00000559898 CENPXA8MT69 81 aa12.64□□□□□ -0.39
HDDC3-205ENST00000559898 CRXO43186 299 aaPredicted RBP12.64□□□□□ -0.39
HDDC3-205ENST00000559898 OR5G3P0C626 314 aa12.64□□□□□ -0.39
HDDC3-205ENST00000559898 CNN1P51911 297 aaKnown RBP12.64□□□□□ -0.39
HDDC3-205ENST00000559898 PLP1P60201 277 aa12.64□□□□□ -0.39
HDDC3-205ENST00000559898 SPINK13Q1W4C9 94 aa12.64□□□□□ -0.39
HDDC3-205ENST00000559898 FAM222AQ5U5X8 452 aa12.64□□□□□ -0.39
HDDC3-205ENST00000559898 MORN5Q5VZ52 161 aa12.64□□□□□ -0.39
HDDC3-205ENST00000559898 OR11H7Q8NGC8 314 aa12.64□□□□□ -0.39
HDDC3-205ENST00000559898 ARL6Q9H0F7 186 aa12.64□□□□□ -0.39
HDDC3-205ENST00000559898 HIGD1AQ9Y241 93 aa12.64□□□□□ -0.39
HDDC3-205ENST00000559898 FAT2Q9NYQ8 4349 aa12.64□□□□□ -0.39
HDDC3-205ENST00000559898 MRPS12O15235 138 aaKnown RBP12.63□□□□□ -0.39
HDDC3-205ENST00000559898 HYPMO75409 117 aa12.63□□□□□ -0.39
HDDC3-205ENST00000559898 TCRBP04435 133 aa12.63□□□□□ -0.39
HDDC3-205ENST00000559898 RNF126Q9BV68 326 aa12.63□□□□□ -0.39
HDDC3-205ENST00000559898 C11orf1Q9H5F2 150 aa12.63□□□□□ -0.39
HDDC3-205ENST00000559898 DKK2Q9UBU2 259 aa12.63□□□□□ -0.39
HDDC3-205ENST00000559898 H3BTX0 84 aa12.62□□□□□ -0.39
HDDC3-205ENST00000559898 MEOX2P50222 304 aa12.62□□□□□ -0.39
HDDC3-205ENST00000559898 TCTAP57738 103 aa12.62□□□□□ -0.39
HDDC3-205ENST00000559898 BAP18Q8IXM2 172 aa12.62□□□□□ -0.39
HDDC3-205ENST00000559898 MGST2Q99735 147 aa12.62□□□□□ -0.39
HDDC3-205ENST00000559898 NPVFQ9HCQ7 196 aa12.62□□□□□ -0.39
HDDC3-205ENST00000559898 LSM5Q9Y4Y9 91 aaKnown RBP12.62□□□□□ -0.39
HDDC3-205ENST00000559898 TRAV12-2A0A075B6T6 113 aa12.61□□□□□ -0.39
HDDC3-205ENST00000559898 LOC102723971A0A1B0GUV8 181 aa12.61□□□□□ -0.39
HDDC3-205ENST00000559898 ZNF705GA8MUZ8 300 aaPredicted RBP12.61□□□□□ -0.39
HDDC3-205ENST00000559898 FAM25EA8MYX2 175 aa12.61□□□□□ -0.39
HDDC3-205ENST00000559898 K7EPK0 472 aa12.61□□□□□ -0.39
HDDC3-205ENST00000559898 TSC22D2O75157 780 aa12.61□□□□□ -0.39
HDDC3-205ENST00000559898 AMBPP02760 352 aa12.61□□□□□ -0.39
HDDC3-205ENST00000559898 SPART-AS1P0CW21 52 aa12.61□□□□□ -0.39
HDDC3-205ENST00000559898 OR10P1Q8NGE3 313 aa12.61□□□□□ -0.39
HDDC3-205ENST00000559898 ARV1Q9H2C2 271 aa12.61□□□□□ -0.39
HDDC3-205ENST00000559898 NUDT15Q9NV35 164 aa12.61□□□□□ -0.39
HDDC3-205ENST00000559898 YTHDF2Q9Y5A9 579 aaKnown RBP12.61□□□□□ -0.39
HDDC3-205ENST00000559898 RFNGQ9Y644 331 aa12.61□□□□□ -0.39
HDDC3-205ENST00000559898 FAM24AA6NFZ4 105 aa12.6□□□□□ -0.39
HDDC3-205ENST00000559898 SMIM9A6NGZ8 99 aa12.6□□□□□ -0.39
HDDC3-205ENST00000559898 AGPAT2O15120 278 aa12.6□□□□□ -0.39
HDDC3-205ENST00000559898 CXCL3P19876 107 aa12.6□□□□□ -0.39
HDDC3-205ENST00000559898 RAP2BP61225 183 aa12.6□□□□□ -0.39
HDDC3-205ENST00000559898 SPATA31B1PQ5VZV4 182 aa12.6□□□□□ -0.39
HDDC3-205ENST00000559898 ZNF738Q8NE65 137 aa12.6□□□□□ -0.39
HDDC3-205ENST00000559898 IGF2BP2-AS1Q96M15 143 aa12.6□□□□□ -0.39
HDDC3-205ENST00000559898 GOLT1BQ9Y3E0 138 aa12.6□□□□□ -0.39
HDDC3-205ENST00000559898 HTN3P15516 51 aa12.59□□□□□ -0.39
HDDC3-205ENST00000559898 AZU1P20160 251 aa12.59□□□□□ -0.39
HDDC3-205ENST00000559898 TAS2R30P59541 319 aa12.59□□□□□ -0.39
HDDC3-205ENST00000559898 KIR3DS1Q14943 382 aa12.59□□□□□ -0.39
HDDC3-205ENST00000559898 TEPPQ6URK8 271 aa12.59□□□□□ -0.39
HDDC3-205ENST00000559898 ZNF431Q8TF32 576 aaPredicted RBP12.59□□□□□ -0.39
HDDC3-205ENST00000559898 TMEM37Q8WXS4 190 aa12.59□□□□□ -0.39
HDDC3-205ENST00000559898 GPR82Q96P67 336 aa12.59□□□□□ -0.39
HDDC3-205ENST00000559898 PARD6GQ9BYG4 376 aaPredicted RBP12.59□□□□□ -0.39
HDDC3-205ENST00000559898 MGAT4CQ9UBM8 478 aa12.59□□□□□ -0.39
HDDC3-205ENST00000559898 A0A087X0K7 114 aa12.58□□□□□ -0.4
HDDC3-205ENST00000559898 TRAV5A0A0B4J249 113 aa12.58□□□□□ -0.4
HDDC3-205ENST00000559898 SLC17A3O00476 420 aa12.58□□□□□ -0.4
HDDC3-205ENST00000559898 CST7O76096 145 aa12.58□□□□□ -0.4
HDDC3-205ENST00000559898 HBE1P02100 147 aa12.58□□□□□ -0.4
HDDC3-205ENST00000559898 SELENOTP62341 195 aa12.58□□□□□ -0.4
HDDC3-205ENST00000559898 HIST1H1AQ02539 215 aaPredicted RBP12.58□□□□□ -0.4
HDDC3-205ENST00000559898 FCN2Q15485 313 aa12.58□□□□□ -0.4
HDDC3-205ENST00000559898 NIPSNAP3BQ9BS92 247 aa12.58□□□□□ -0.4
HDDC3-205ENST00000559898 PLAC8L1A1L4L8 177 aa12.57□□□□□ -0.4
HDDC3-205ENST00000559898 C5orf51A6NDU8 294 aa12.57□□□□□ -0.4
HDDC3-205ENST00000559898 PRAC2D3DTV9 90 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms