RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 CLRN3Q8NCR9 226 aa4.25□□□□□ -1.73
USP3-215ENST00000559771 KIR2DL5BQ8NHK3 375 aa4.25□□□□□ -1.73
USP3-215ENST00000559771 CD300LFQ8TDQ1 290 aa4.25□□□□□ -1.73
USP3-215ENST00000559771 VN1R17PQ8TDU5 208 aa4.25□□□□□ -1.73
USP3-215ENST00000559771 SRSF8Q9BRL6 282 aaKnown RBP4.25□□□□□ -1.73
USP3-215ENST00000559771 QTRT1Q9BXR0 403 aaKnown RBP4.25□□□□□ -1.73
USP3-215ENST00000559771 PARD6GQ9BYG4 376 aaPredicted RBP4.25□□□□□ -1.73
USP3-215ENST00000559771 NDUFA4L2Q9NRX3 87 aa4.25□□□□□ -1.73
USP3-215ENST00000559771 TMEM140Q9NV12 185 aa4.25□□□□□ -1.73
USP3-215ENST00000559771 RCL1Q9Y2P8 373 aaKnown RBP4.25□□□□□ -1.73
USP3-215ENST00000559771 UFC1Q9Y3C8 167 aa4.25□□□□□ -1.73
USP3-215ENST00000559771 DNAH17Q9UFH2 4485 aa4.25□□□□□ -1.73
USP3-215ENST00000559771 IGHV3-21A0A0B4J1V1 117 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 TRAV1-1A0A0B4J248 108 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 LOC105371267A0A1B0GV96 52 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 K7EMT4 169 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 NDUFA4O00483 81 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 UBE2CO00762 179 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 ZNF207O43670 478 aaKnown RBP4.24□□□□□ -1.73
USP3-215ENST00000559771 HBE1P02100 147 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 OR13C7P0DN81 318 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 TAGLN2P37802 199 aaKnown RBP4.24□□□□□ -1.73
USP3-215ENST00000559771 SNCAP37840 140 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 SULT1A1P50225 295 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 APOC4P55056 127 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 HBG1P69891 147 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 HBG2P69892 147 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 SERF2P84101 59 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 FLI1Q01543 452 aaPredicted RBP4.24□□□□□ -1.73
USP3-215ENST00000559771 CATR1Q13166 79 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 FAM90A2PQ658T7 463 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 LGALS9CQ6DKI2 356 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 FAM122CQ6P4D5 195 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 TMEM252Q8N6L7 170 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 OR5B3Q8NH48 314 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 OR51H1Q8NH63 302 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 PHLDA1Q8WV24 401 aaPredicted RBP4.24□□□□□ -1.73
USP3-215ENST00000559771 RNF2Q99496 336 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 AIFM2Q9BRQ8 373 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 COMMD5Q9GZQ3 224 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 HRH4Q9H3N8 390 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 TREM1Q9NP99 234 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 DAZ1Q9NQZ3 744 aaKnown RBP4.24□□□□□ -1.73
USP3-215ENST00000559771 SMPXQ9UHP9 88 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 F11RQ9Y624 299 aaKnown RBP4.24□□□□□ -1.73
USP3-215ENST00000559771 PKD1P98161 4303 aa4.24□□□□□ -1.73
USP3-215ENST00000559771 IGHV3-49A0A0A0MS15 119 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 MARCH11A6NNE9 402 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 C15orf62A8K5M9 175 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 I3L2K1 104 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 DNASE2O00115 360 aaPredicted RBP4.23□□□□□ -1.73
USP3-215ENST00000559771 CHEK1O14757 476 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 SCO1O75880 301 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 IFNA5P01569 189 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 IGKV1-39P01597 117 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 IGKV1D-39P04432 117 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 GIG44P09565 113 aaPredicted RBP4.23□□□□□ -1.73
USP3-215ENST00000559771 G6PCP35575 357 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 LPAR6P43657 344 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 CAMLGP49069 296 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 NANOS2P60321 138 aaKnown RBP4.23□□□□□ -1.73
USP3-215ENST00000559771 POLR2GP62487 172 aaKnown RBP eCLIP4.23□□□□□ -1.73
USP3-215ENST00000559771 RHEBQ15382 184 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 ATP6V1FQ16864 119 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 KRTAP5-4Q6L8H1 288 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 SLC25A24Q6NUK1 477 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 SPSB3Q6PJ21 355 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 Q6ZRG5 221 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 STPG3Q8N7X2 389 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 OR10G4Q8NGN3 311 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 OR1L8Q8NGR8 309 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 PINX1Q96BK5 328 aaKnown RBP4.23□□□□□ -1.73
USP3-215ENST00000559771 BSCL2Q96G97 398 aaPredicted RBP4.23□□□□□ -1.73
USP3-215ENST00000559771 CIB3Q96Q77 187 aaPredicted RBP4.23□□□□□ -1.73
USP3-215ENST00000559771 ATP6V0BQ99437 205 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 ATP5SQ99766 215 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 PSMG3Q9BT73 122 aaPredicted RBP4.23□□□□□ -1.73
USP3-215ENST00000559771 SLC35B3Q9H1N7 401 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 SMCO4Q9NRQ5 59 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 C21orf62Q9NYP8 219 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 THYN1Q9P016 225 aa4.23□□□□□ -1.73
USP3-215ENST00000559771 PKHD1P08F94 4074 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 IGHV7-4-1A0A0J9YVY3 117 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 OR4C46A6NHA9 309 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 SYNGR2O43760 224 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 SSSCA1O60232 199 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 KRASP01116 189 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 IGHV3-48P01763 117 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 MBP02144 154 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 APOHP02749 345 aaPredicted RBP4.22□□□□□ -1.73
USP3-215ENST00000559771 SFTA3P0C7M3 94 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 AKR1C2P52895 323 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 RPP30P78346 268 aaKnown RBP4.22□□□□□ -1.73
USP3-215ENST00000559771 NHLH2Q02577 135 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 GUK1Q16774 197 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 RNF212Q495C1 297 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 AARDQ4LEZ3 155 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 AKR1C8PQ5T2L2 129 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 FAM24BQ8N5W8 94 aa4.22□□□□□ -1.73
USP3-215ENST00000559771 OR5C1Q8NGR4 320 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms