RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TOMM40O96008 361 aa9.84□□□□□ -0.83
LDLR-205ENST00000557933 IGHV3-23P01764 117 aa9.84□□□□□ -0.83
LDLR-205ENST00000557933 ARF6P62330 175 aa9.84□□□□□ -0.83
LDLR-205ENST00000557933 POU2AF1Q16633 256 aa9.84□□□□□ -0.83
LDLR-205ENST00000557933 OR4C13Q8NGP0 309 aa9.84□□□□□ -0.83
LDLR-205ENST00000557933 OR1L4Q8NGR5 311 aa9.84□□□□□ -0.83
LDLR-205ENST00000557933 FBXL15Q9H469 300 aa9.84□□□□□ -0.83
LDLR-205ENST00000557933 TRAV17A0A0B4J275 112 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 A8MWL6 223 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 TNFRSF1AP19438 455 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 CST9LQ9H4G1 147 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 SPG11Q96JI7 2443 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 TMEM213A2RRL7 107 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.83□□□□□ -0.84
LDLR-205ENST00000557933 CTSZQ9UBR2 303 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 IGLV2-23P01705 113 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 IFI27P40305 119 aaPredicted RBP9.83□□□□□ -0.84
LDLR-205ENST00000557933 COX19Q49B96 90 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 ZNF833PQ6ZTB9 187 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 ZADH2Q8N4Q0 377 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 C1orf162Q8NEQ5 155 aaPredicted RBP9.83□□□□□ -0.84
LDLR-205ENST00000557933 OSR1Q8TAX0 266 aaPredicted RBP9.83□□□□□ -0.84
LDLR-205ENST00000557933 PERPQ96FX8 193 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 C18orf15Q96N68 181 aa9.83□□□□□ -0.84
LDLR-205ENST00000557933 FNDC10F2Z333 226 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 OR2J3O76001 311 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 LY6HO94772 140 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 CD40P25942 277 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 KLF5Q13887 457 aaPredicted RBP9.82□□□□□ -0.84
LDLR-205ENST00000557933 PLGLAQ15195 96 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 ANKRD39Q53RE8 183 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 FAM231DQ6ZW35 169 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 OR5AN1Q8NGI8 311 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 PRSS3P2Q8NHM4 247 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 WIPF2Q8TF74 440 aaPredicted RBP9.82□□□□□ -0.84
LDLR-205ENST00000557933 CACNG8Q8WXS5 425 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 C8orf49Q96NF6 230 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 MAP1LC3CQ9BXW4 147 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 HRNRQ86YZ3 2850 aaPredicted RBP9.82□□□□□ -0.84
LDLR-205ENST00000557933 RBPMS2Q6ZRY4 209 aaKnown RBP9.82□□□□□ -0.84
LDLR-205ENST00000557933 MLST8Q9BVC4 326 aa9.82□□□□□ -0.84
LDLR-205ENST00000557933 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.81□□□□□ -0.84
LDLR-205ENST00000557933 FBLL1A6NHQ2 334 aaKnown RBP9.81□□□□□ -0.84
LDLR-205ENST00000557933 ZNF785A8K8V0 405 aa9.81□□□□□ -0.84
LDLR-205ENST00000557933 GP9P14770 177 aa9.81□□□□□ -0.84
LDLR-205ENST00000557933 MYCNOSP40205 109 aa9.81□□□□□ -0.84
LDLR-205ENST00000557933 TMEM191AQ9H0A3 160 aa9.81□□□□□ -0.84
LDLR-205ENST00000557933 LINC00312Q9Y6C7 94 aa9.81□□□□□ -0.84
LDLR-205ENST00000557933 TIMM23BQ5SRD1 257 aa9.81□□□□□ -0.84
LDLR-205ENST00000557933 TMEM75Q8N9X5 138 aa9.81□□□□□ -0.84
LDLR-205ENST00000557933 C19orf24Q9BVV8 132 aa9.81□□□□□ -0.84
LDLR-205ENST00000557933 GAL3ST2Q9H3Q3 398 aa9.81□□□□□ -0.84
LDLR-205ENST00000557933 IGLV3-9A0A075B6K5 115 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 ZNF207O43670 478 aaKnown RBP9.8□□□□□ -0.84
LDLR-205ENST00000557933 UCNP55089 124 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 COTL1Q14019 142 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 OCIAD2Q56VL3 154 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 Q86TA4 180 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 AMN1Q8IY45 258 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 C5orf17Q8NAS9 161 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 Q8TAT8 98 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 AP5S1Q9NUS5 200 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 GAGE12BA1L429 117 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 C7orf71A4D174 169 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 GOSR1O95249 250 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 OR5AL1P0C617 328 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 SUB1P53999 127 aaKnown RBP eCLIP9.8□□□□□ -0.849e-7■■■□□ 17.7
LDLR-205ENST00000557933 BSPH1Q075Z2 132 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 MRGPRG-AS1Q2M3A8 158 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 LRRC10Q5BKY1 277 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 TMEM167AQ8TBQ9 72 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 NEU4Q8WWR8 484 aaPredicted RBP9.8□□□□□ -0.84
LDLR-205ENST00000557933 SCNM1Q9BWG6 230 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 TMEM133Q9H2Q1 129 aa9.8□□□□□ -0.84
LDLR-205ENST00000557933 GAS8-AS1O95177 125 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 LTAP01374 205 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 PPIFP30405 207 aaKnown RBP9.79□□□□□ -0.84
LDLR-205ENST00000557933 RPL27AP46776 148 aaKnown RBP9.79□□□□□ -0.84
LDLR-205ENST00000557933 NMUP48645 174 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 SCRT2Q9NQ03 307 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 THYN1Q9P016 225 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 NCOR2Q9Y618 2525 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 CHD8Q9HCK8 2581 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 C19orf71A6NCJ1 209 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 FAM231BA6NCW3 169 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 D6R8Y8 96 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 H3BUT2 72 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 GPR183P32249 361 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 CACNG7P62955 275 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 FOXC1Q12948 553 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 CSMD2Q7Z408 3487 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 ADIPOQQ15848 244 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 VMA21Q3ZAQ7 101 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 FA2HQ7L5A8 372 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 SLC25A39Q9BZJ4 359 aaPredicted RBP9.79□□□□□ -0.84
LDLR-205ENST00000557933 PRSS22Q9GZN4 317 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 ST20Q9HBF5 79 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 HIGD1AQ9Y241 93 aa9.79□□□□□ -0.84
LDLR-205ENST00000557933 PPIAL4EA0A075B759 164 aa9.78□□□□□ -0.84
LDLR-205ENST00000557933 IGHV3OR16-13A0A075B7E8 117 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms