RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 IGHV1-8P0DP01 117 aa12.98□□□□□ -0.33
SHMT2-232ENST00000557487 Q6ZS92 163 aa12.98□□□□□ -0.33
SHMT2-232ENST00000557487 TPSG1Q9NRR2 321 aa12.98□□□□□ -0.33
SHMT2-232ENST00000557487 TAX1BP3O14907 124 aa12.98□□□□□ -0.33
SHMT2-232ENST00000557487 FCN3O75636 299 aa12.98□□□□□ -0.33
SHMT2-232ENST00000557487 LOXP28300 417 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-232ENST00000557487 CSN1S1P47710 185 aa12.98□□□□□ -0.33
SHMT2-232ENST00000557487 FAM57AQ8TBR7 257 aa12.98□□□□□ -0.33
SHMT2-232ENST00000557487 SLC25A39Q9BZJ4 359 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-232ENST00000557487 TMEM133Q9H2Q1 129 aa12.98□□□□□ -0.33
SHMT2-232ENST00000557487 SIGLEC9Q9Y336 463 aa12.98□□□□□ -0.33
SHMT2-232ENST00000557487 ZFHX4Q86UP3 3567 aa12.97□□□□□ -0.33
SHMT2-232ENST00000557487 hDV102S1A0JD36 115 aa12.97□□□□□ -0.33
SHMT2-232ENST00000557487 ENSAO43768 121 aaKnown RBP12.97□□□□□ -0.33
SHMT2-232ENST00000557487 IGLV2-11P01706 119 aa12.97□□□□□ -0.33
SHMT2-232ENST00000557487 IGLC1P0CG04 106 aa12.97□□□□□ -0.33
SHMT2-232ENST00000557487 S100A7AQ86SG5 101 aa12.97□□□□□ -0.33
SHMT2-232ENST00000557487 RNF5Q99942 180 aa12.97□□□□□ -0.33
SHMT2-232ENST00000557487 AP5S1Q9NUS5 200 aa12.97□□□□□ -0.33
SHMT2-232ENST00000557487 CACNA1BQ00975 2339 aa12.97□□□□□ -0.33
SHMT2-232ENST00000557487 C16orf97H3BN30 126 aa12.96□□□□□ -0.33
SHMT2-232ENST00000557487 M0QZ24 198 aa12.96□□□□□ -0.33
SHMT2-232ENST00000557487 ANKRD39Q53RE8 183 aa12.96□□□□□ -0.33
SHMT2-232ENST00000557487 LINC00173Q6ZV60 143 aa12.96□□□□□ -0.33
SHMT2-232ENST00000557487 RPRMLQ8N4K4 120 aa12.96□□□□□ -0.33
SHMT2-232ENST00000557487 NEU4Q8WWR8 484 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-232ENST00000557487 CELSR3Q9NYQ7 3312 aa12.96□□□□□ -0.34
SHMT2-232ENST00000557487 PSG1P11464 419 aa12.96□□□□□ -0.34
SHMT2-232ENST00000557487 OR10AG1Q8NH19 301 aa12.96□□□□□ -0.34
SHMT2-232ENST00000557487 CADP27708 2225 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 PPBPP02775 128 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 COX8AP10176 69 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 LYZP61626 148 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 GOLT1AQ6ZVE7 132 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 Q6ZVH6 145 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 PRNTQ86SH4 94 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 BPIFA4PQ86YQ2 179 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 CIARTQ8N365 385 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-232ENST00000557487 RITA1Q96K30 269 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 RASL11BQ9BPW5 248 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 TMUB1Q9BVT8 246 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 ZZEF1O43149 2961 aa12.95□□□□□ -0.34
SHMT2-232ENST00000557487 OVOL3O00110 214 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 C22orf34Q6ZV56 151 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 FA2HQ7L5A8 372 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 PPP1R27Q86WC6 154 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 NGBQ9NPG2 151 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 TRBV19A0A075B6N1 114 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 TEX22C9J3V5 150 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 SEC11AP67812 179 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 RUSC1-AS1Q66K80 236 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 LYPD2Q6UXB3 125 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 ZNF493Q6ZR52 646 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 ARL6IP6Q8N6S5 226 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 CCL17Q92583 94 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 SHANK2-AS3Q9BTD1 123 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 ZNF747Q9BV97 191 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 CTSZQ9UBR2 303 aa12.94□□□□□ -0.34
SHMT2-232ENST00000557487 LAMA5O15230 3695 aa12.93□□□□□ -0.34
SHMT2-232ENST00000557487 SERTM2A0A1B0GWG4 89 aa12.93□□□□□ -0.34
SHMT2-232ENST00000557487 I3L2K1 104 aa12.93□□□□□ -0.34
SHMT2-232ENST00000557487 K7EM74 188 aa12.93□□□□□ -0.34
SHMT2-232ENST00000557487 GPR183P32249 361 aa12.93□□□□□ -0.34
SHMT2-232ENST00000557487 OR1N2Q8NGR9 330 aa12.93□□□□□ -0.34
SHMT2-232ENST00000557487 PEF1Q9UBV8 284 aaKnown RBP12.93□□□□□ -0.34
SHMT2-232ENST00000557487 RBP4P02753 201 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 WFDC8Q8IUA0 241 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 SRSF12Q8WXF0 261 aaKnown RBP12.92□□□□□ -0.34
SHMT2-232ENST00000557487 INSIG2Q9Y5U4 225 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 MUC21A0A0G2JKD1 596 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 MUC21A0A140T8X8 626 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 H3BRN7 92 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 IGLV1-47P01700 117 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 CD24P25063 80 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 ARF6P62330 175 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 PSG3Q16557 428 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 C21orf62-AS1Q17RA5 79 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 MUC21Q5SSG8 566 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 PRSS3P2Q8NHM4 247 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 PSG8Q9UQ74 426 aa12.92□□□□□ -0.34
SHMT2-232ENST00000557487 TRAV8-1A0A0A6YYK1 113 aa12.91□□□□□ -0.34
SHMT2-232ENST00000557487 IGHV1-3A0A0C4DH29 117 aa12.91□□□□□ -0.34
SHMT2-232ENST00000557487 H3BTX0 84 aa12.91□□□□□ -0.34
SHMT2-232ENST00000557487 BSPH1Q075Z2 132 aa12.91□□□□□ -0.34
SHMT2-232ENST00000557487 PDE6HQ13956 83 aa12.91□□□□□ -0.34
SHMT2-232ENST00000557487 COTL1Q14019 142 aa12.91□□□□□ -0.34
SHMT2-232ENST00000557487 EXOC3-AS1Q8N2X6 119 aa12.91□□□□□ -0.34
SHMT2-232ENST00000557487 ZC2HC1AQ96GY0 325 aa12.91□□□□□ -0.34
SHMT2-232ENST00000557487 BBC3Q96PG8 261 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-232ENST00000557487 FBLL1A6NHQ2 334 aaKnown RBP12.9□□□□□ -0.34
SHMT2-232ENST00000557487 ARMS2P0C7Q2 107 aa12.9□□□□□ -0.34
SHMT2-232ENST00000557487 RNASE6Q93091 150 aaKnown RBP12.9□□□□□ -0.34
SHMT2-232ENST00000557487 U3KQK5 164 aa12.9□□□□□ -0.34
SHMT2-232ENST00000557487 IGHV3-72A0A0B4J1Y9 119 aa12.9□□□□□ -0.35
SHMT2-232ENST00000557487 CT45A10P0DMU9 189 aa12.9□□□□□ -0.35
SHMT2-232ENST00000557487 PSMG4Q5JS54 123 aa12.9□□□□□ -0.35
SHMT2-232ENST00000557487 SIGLEC15Q6ZMC9 328 aa12.9□□□□□ -0.35
SHMT2-232ENST00000557487 ZNF785A8K8V0 405 aa12.89□□□□□ -0.35
SHMT2-232ENST00000557487 BUB1B-PAK6H3BSN5 160 aa12.89□□□□□ -0.35
SHMT2-232ENST00000557487 IGKV1-17P01599 117 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms