RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 YTHDF2Q9Y5A9 579 aaKnown RBP7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 PKD1P98161 4303 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 A0A1B0GVY2 172 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 PRSS29PA6NIE9 313 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 UPK1BO75841 260 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 OXA1LQ15070 435 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 LGALS9BQ3B8N2 356 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 CCDC190Q86UF4 302 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 OR4D5Q8NGN0 318 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 OR1B1Q8NGR6 318 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 DEDD2Q8WXF8 326 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 GPR82Q96P67 336 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 TMEM147Q9BVK8 224 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 STRAPQ9Y3F4 350 aaKnown RBP7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 V9GYH0 126 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 PKHD1P08F94 4074 aa7.88□□□□□ -1.15
CCDC88C-213ENST00000557455 A8MTW9 85 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 H3BP45 60 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 RTL8CO15255 209 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 DEFA1P59665 94 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 DEFA3P59666 94 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 DAD1P61803 113 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 FGL1Q08830 312 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 TMEM182Q6ZP80 229 aaPredicted RBP7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 ACOT7LQ6ZUV0 252 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 IGF2BP2-AS1Q96M15 143 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 C17orf77Q96MU5 243 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 NACAE9PAV3 2078 aa7.87□□□□□ -1.15
CCDC88C-213ENST00000557455 IGLV2-18A0A075B6J9 118 aa7.86□□□□□ -1.15
CCDC88C-213ENST00000557455 SMCO3A2RU48 225 aa7.86□□□□□ -1.15
CCDC88C-213ENST00000557455 DUSP14O95147 198 aaKnown RBP7.86□□□□□ -1.15
CCDC88C-213ENST00000557455 IL5P05113 134 aa7.86□□□□□ -1.15
CCDC88C-213ENST00000557455 CNN1P51911 297 aaKnown RBP7.86□□□□□ -1.15
CCDC88C-213ENST00000557455 UBE2MP61081 183 aaKnown RBP7.86□□□□□ -1.15
CCDC88C-213ENST00000557455 RAP2BP61225 183 aa7.86□□□□□ -1.15
CCDC88C-213ENST00000557455 RNF212Q495C1 297 aa7.86□□□□□ -1.15
CCDC88C-213ENST00000557455 IGFL4Q6B9Z1 124 aa7.86□□□□□ -1.15
CCDC88C-213ENST00000557455 AMTNQ6UX39 209 aa7.86□□□□□ -1.15
CCDC88C-213ENST00000557455 TMEM144Q7Z5S9 345 aa7.86□□□□□ -1.15
CCDC88C-213ENST00000557455 TRAV8-2A0A0B4J237 113 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 A0A1B0GVG6 124 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 M0R2Z0 102 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 INSP01308 110 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 POLR2GP62487 172 aaKnown RBP eCLIP7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 ID3Q02535 119 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 SPINK13Q1W4C9 94 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 TMEM88Q6PEY1 159 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 Q6ZNX1 250 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 CYP2G1PQ6ZSU1 146 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 RNF182Q8N6D2 247 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 OR11H7Q8NGC8 314 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 SLC25A39Q9BZJ4 359 aaPredicted RBP7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 PSENENQ9NZ42 101 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 HIGD1AQ9Y241 93 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 PCLOQ9Y6V0 5065 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 DNAH11Q96DT5 4516 aa7.85□□□□□ -1.15
CCDC88C-213ENST00000557455 C9orf170A2RU37 121 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 ZNF705GA8MUZ8 300 aaPredicted RBP7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 H3BRN7 92 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 CRXO43186 299 aaPredicted RBP7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 HYPMO75409 117 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 ADAP1O75689 374 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 PTTG1O95997 202 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 OR5G3P0C626 314 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 MED14OSP0DP75 135 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 RPL7P18124 248 aaKnown RBP7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 INPP1P49441 399 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 B2MP61769 119 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 SOHLH1Q5JUK2 328 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 Q6ZR54 194 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 ZNF738Q8NE65 137 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 SHANK2-AS3Q9BTD1 123 aa7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 DYNC1H1Q14204 4646 aaKnown RBP7.84□□□□□ -1.15
CCDC88C-213ENST00000557455 hCG_2014768A0A024R1R8 64 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 LYRM9A8MSI8 78 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 SSSCA1O60232 199 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 PRM2P04554 102 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 LINC00869P0C866 280 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 RRAS2P62070 204 aaPredicted RBP7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 SELENOTP62341 195 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 S100A7AQ86SG5 101 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 BAP18Q8IXM2 172 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 C15orf53Q8NAA6 179 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 LRRC20Q8TCA0 184 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 SMIM8Q96KF7 97 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 SRRQ9GZT4 340 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 PPP1R14DQ9NXH3 145 aa7.83□□□□□ -1.16
CCDC88C-213ENST00000557455 TRAV12-2A0A075B6T6 113 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 NAP1L6A6NFF2 107 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 PMS2P5A8MQ11 134 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 BOLA2-SMG1P6H3BVE0 249 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 PFDN1O60925 122 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 NDUFB6O95139 128 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 OR4E1P0C645 316 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 DEFB130BP0DP73 79 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 DEFB130AP0DP74 79 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 TSPOP30536 169 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 PLP1P60201 277 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 RHOBP62745 196 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms