RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 RPL11P62913 178 aaKnown RBP9.6□□□□□ -0.87
SHMT2-227ENST00000557269 SIGLEC15Q6ZMC9 328 aa9.6□□□□□ -0.87
SHMT2-227ENST00000557269 MIR17HGQ75NE6 70 aa9.6□□□□□ -0.87
SHMT2-227ENST00000557269 OR8I2Q8N0Y5 310 aa9.6□□□□□ -0.87
SHMT2-227ENST00000557269 OR2G3Q8NGZ4 309 aa9.6□□□□□ -0.87
SHMT2-227ENST00000557269 GATAD1Q8WUU5 269 aa9.6□□□□□ -0.87
SHMT2-227ENST00000557269 PFDN5Q99471 154 aa9.6□□□□□ -0.87
SHMT2-227ENST00000557269 MS4A6AQ9H2W1 248 aa9.6□□□□□ -0.87
SHMT2-227ENST00000557269 BOLA1Q9Y3E2 137 aa9.6□□□□□ -0.87
SHMT2-227ENST00000557269 BOLA2-SMG1P6H3BVE0 249 aa9.59□□□□□ -0.87
SHMT2-227ENST00000557269 SNRPCP09234 159 aaKnown RBP9.59□□□□□ -0.87
SHMT2-227ENST00000557269 CD7P09564 240 aa9.59□□□□□ -0.87
SHMT2-227ENST00000557269 SPP1P10451 314 aa9.59□□□□□ -0.87
SHMT2-227ENST00000557269 FAM78BQ5VT40 261 aa9.59□□□□□ -0.87
SHMT2-227ENST00000557269 WFDC3Q8IUB2 231 aa9.59□□□□□ -0.87
SHMT2-227ENST00000557269 FAM24BQ8N5W8 94 aa9.59□□□□□ -0.87
SHMT2-227ENST00000557269 GNPNAT1Q96EK6 184 aaPredicted RBP9.59□□□□□ -0.87
SHMT2-227ENST00000557269 FAM167A-AS1Q96KT0 104 aa9.59□□□□□ -0.87
SHMT2-227ENST00000557269 SPAG8Q99932 426 aaPredicted RBP9.59□□□□□ -0.87
SHMT2-227ENST00000557269 SLC25A2Q9BXI2 301 aa9.59□□□□□ -0.87
SHMT2-227ENST00000557269 PFDN2Q9UHV9 154 aa9.59□□□□□ -0.87
SHMT2-227ENST00000557269 HELTA6NFD8 242 aa9.58□□□□□ -0.88
SHMT2-227ENST00000557269 M6PRP20645 277 aa9.58□□□□□ -0.88
SHMT2-227ENST00000557269 Q8N1Y9 231 aa9.58□□□□□ -0.88
SHMT2-227ENST00000557269 STXBP6Q8NFX7 210 aa9.58□□□□□ -0.88
SHMT2-227ENST00000557269 DCANP1Q8TF63 244 aa9.58□□□□□ -0.88
SHMT2-227ENST00000557269 AURKAIP1Q9NWT8 199 aaPredicted RBP9.58□□□□□ -0.88
SHMT2-227ENST00000557269 NOTCH1P46531 2555 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 H3BQ15 152 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 K7EQG2 157 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 CD5P06127 495 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 SERF2P84101 59 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 ACOT6Q3I5F7 207 aaPredicted RBP9.57□□□□□ -0.88
SHMT2-227ENST00000557269 FAM122CQ6P4D5 195 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 BAP18Q8IXM2 172 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 RPP25LQ8N5L8 163 aaKnown RBP9.57□□□□□ -0.88
SHMT2-227ENST00000557269 OR10G4Q8NGN3 311 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 OR10G9Q8NGN4 311 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 OR10G7Q8NGN6 311 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 STOML3Q8TAV4 291 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 ZNF503Q96F45 646 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 RPRMQ9NS64 109 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 C19orf73Q9NVV2 129 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 FUT9Q9Y231 359 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 NBEAL1Q6ZS30 2694 aa9.57□□□□□ -0.88
SHMT2-227ENST00000557269 DNAH3Q8TD57 4116 aa9.56□□□□□ -0.88
SHMT2-227ENST00000557269 H3BTX0 84 aa9.56□□□□□ -0.88
SHMT2-227ENST00000557269 DNASE2O00115 360 aaPredicted RBP9.56□□□□□ -0.88
SHMT2-227ENST00000557269 SOCS3O14543 225 aa9.56□□□□□ -0.88
SHMT2-227ENST00000557269 HMGB3O15347 200 aaKnown RBP9.56□□□□□ -0.88
SHMT2-227ENST00000557269 PYYP10082 97 aa9.56□□□□□ -0.88
SHMT2-227ENST00000557269 TPT1P13693 172 aaKnown RBP9.56□□□□□ -0.88
SHMT2-227ENST00000557269 RPL7P18124 248 aaKnown RBP9.56□□□□□ -0.88
SHMT2-227ENST00000557269 S100A7P31151 101 aa9.56□□□□□ -0.88
SHMT2-227ENST00000557269 TMEM41BQ5BJD5 291 aa9.56□□□□□ -0.88
SHMT2-227ENST00000557269 SSX7Q7RTT5 188 aa9.56□□□□□ -0.88
SHMT2-227ENST00000557269 MRPL32Q9BYC8 188 aaKnown RBP9.56□□□□□ -0.88
SHMT2-227ENST00000557269 WFDC10AQ9H1F0 79 aa9.56□□□□□ -0.88
SHMT2-227ENST00000557269 NRN1Q9NPD7 142 aa9.56□□□□□ -0.88
SHMT2-227ENST00000557269 UBQLN2Q9UHD9 624 aa9.56□□□□□ -0.88
SHMT2-227ENST00000557269 TRAV2A0A0B4J234 112 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 OR4C46A6NHA9 309 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 K7EIL1 84 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 SEC11BP0C7V7 166 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 IGLC2P0DOY2 106 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 GALR1P47211 349 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 CD81P60033 236 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 RHOBP62745 196 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 PAFAH1B2P68402 229 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 ZNF726P1Q15940 193 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 ZNF124Q15973 351 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 ODF3L2Q3SX64 289 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 IGFL4Q6B9Z1 124 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 S100A7AQ86SG5 101 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 SLC51BQ86UW2 128 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 BPIFA4PQ86YQ2 179 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 TMED6Q8WW62 240 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 GPR82Q96P67 336 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 ZNF586Q9NXT0 402 aa9.55□□□□□ -0.88
SHMT2-227ENST00000557269 A0A087X0K7 114 aa9.54□□□□□ -0.88
SHMT2-227ENST00000557269 TRAV8-2A0A0B4J237 113 aa9.54□□□□□ -0.88
SHMT2-227ENST00000557269 MBP02144 154 aa9.54□□□□□ -0.88
SHMT2-227ENST00000557269 ATF4P18848 351 aaPredicted RBP9.54□□□□□ -0.88
SHMT2-227ENST00000557269 FHITP49789 147 aa9.54□□□□□ -0.88
SHMT2-227ENST00000557269 EIF5AP63241 154 aaKnown RBP9.54□□□□□ -0.88
SHMT2-227ENST00000557269 RAB24Q969Q5 203 aa9.54□□□□□ -0.88
SHMT2-227ENST00000557269 FXYD5Q96DB9 178 aa9.54□□□□□ -0.88
SHMT2-227ENST00000557269 C20orf173Q96LM9 149 aa9.54□□□□□ -0.88
SHMT2-227ENST00000557269 TMEM14CQ9P0S9 112 aa9.54□□□□□ -0.88
SHMT2-227ENST00000557269 ZMAT5Q9UDW3 170 aaKnown RBP9.54□□□□□ -0.88
SHMT2-227ENST00000557269 SORL1Q92673 2214 aa9.54□□□□□ -0.88
SHMT2-227ENST00000557269 A0A1W2PPV4 95 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 SLC17A3O00476 420 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 OR10J4P0C629 311 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 ZNF688P0C7X2 276 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 HLA-DMBP28068 263 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 CDC34P49427 236 aaPredicted RBP9.53□□□□□ -0.88
SHMT2-227ENST00000557269 DEFB1P60022 68 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 DEFA6Q01524 100 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms