RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 WDR61Q9GZS3 305 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 RNF24Q9Y225 148 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 ELOA3CA0A087WX78 387 aaPredicted RBP8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 C17orf112F2Z3M2 114 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 RPL7P18124 248 aaKnown RBP8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 ID1P41134 155 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 PRR20EP86478 221 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 PRR20CP86479 221 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 PRR20DP86480 221 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 PRR20BP86481 221 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 PRR20AP86496 221 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 TMEM37Q8WXS4 190 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 GPR82Q96P67 336 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 PFDN5Q99471 154 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 ZMAT4Q9H898 229 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 DNAJC4Q9NNZ3 241 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 KCNIP2Q9NS61 270 aa8.5□□□□□ -1.05
CCDC88C-212ENST00000556767 SMLR1H3BR10 107 aa8.49□□□□□ -1.05
CCDC88C-212ENST00000556767 CHAC2Q8WUX2 184 aa8.49□□□□□ -1.05
CCDC88C-212ENST00000556767 C16orf92Q96LL3 132 aa8.49□□□□□ -1.05
CCDC88C-212ENST00000556767 WFDC1Q9HC57 220 aa8.49□□□□□ -1.05
CCDC88C-212ENST00000556767 KNCNA6PVL3 124 aa8.48□□□□□ -1.05
CCDC88C-212ENST00000556767 MEOX2P50222 304 aa8.48□□□□□ -1.05
CCDC88C-212ENST00000556767 APOC4P55056 127 aa8.48□□□□□ -1.05
CCDC88C-212ENST00000556767 ACTL10Q5JWF8 245 aa8.48□□□□□ -1.05
CCDC88C-212ENST00000556767 LINC00322Q6ZN03 302 aaPredicted RBP8.48□□□□□ -1.05
CCDC88C-212ENST00000556767 STHQ8IWL8 128 aa8.48□□□□□ -1.05
CCDC88C-212ENST00000556767 LRRC20Q8TCA0 184 aa8.48□□□□□ -1.05
CCDC88C-212ENST00000556767 AQP10Q96PS8 301 aa8.48□□□□□ -1.05
CCDC88C-212ENST00000556767 SPATA25Q9BR10 227 aa8.48□□□□□ -1.05
CCDC88C-212ENST00000556767 U3KQK5 164 aa8.48□□□□□ -1.05
CCDC88C-212ENST00000556767 TRAV5A0A0B4J249 113 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 ARPC5O15511 151 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 SNRPCP09234 159 aaKnown RBP8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 PSMB3P49720 205 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 ZNF266Q14584 549 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 GCSAMLQ5JQS6 135 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 FFAR4Q5NUL3 377 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 SAMD13Q5VXD3 122 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 MORN5Q5VZ52 161 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 BPIFA4PQ86YQ2 179 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 GATAD1Q8WUU5 269 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 TM2D3Q9BRN9 247 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 SEPSECSQ9HD40 501 aaKnown RBP8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 RETNQ9HD89 108 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 TNFSF18Q9UNG2 199 aa8.47□□□□□ -1.05
CCDC88C-212ENST00000556767 hCG_2014768A0A024R1R8 64 aa8.46□□□□□ -1.06
CCDC88C-212ENST00000556767 ISLRO14498 428 aa8.46□□□□□ -1.06
CCDC88C-212ENST00000556767 SOCS3O14543 225 aa8.46□□□□□ -1.06
CCDC88C-212ENST00000556767 FAM78BQ5VT40 261 aa8.46□□□□□ -1.06
CCDC88C-212ENST00000556767 IGFL4Q6B9Z1 124 aa8.46□□□□□ -1.06
CCDC88C-212ENST00000556767 Q6ZNX1 250 aa8.46□□□□□ -1.06
CCDC88C-212ENST00000556767 HSD17B11Q8NBQ5 300 aa8.46□□□□□ -1.06
CCDC88C-212ENST00000556767 RCHY1Q96PM5 261 aa8.46□□□□□ -1.06
CCDC88C-212ENST00000556767 DNAH3Q8TD57 4116 aa8.45□□□□□ -1.06
CCDC88C-212ENST00000556767 RNF222A6NCQ9 220 aa8.45□□□□□ -1.06
CCDC88C-212ENST00000556767 G3V3Q6 166 aa8.45□□□□□ -1.06
CCDC88C-212ENST00000556767 H3BTX0 84 aa8.45□□□□□ -1.06
CCDC88C-212ENST00000556767 DEFB1P60022 68 aa8.45□□□□□ -1.06
CCDC88C-212ENST00000556767 PARD6GQ9BYG4 376 aaPredicted RBP8.45□□□□□ -1.06
CCDC88C-212ENST00000556767 MFFQ9GZY8 342 aa8.45□□□□□ -1.06
CCDC88C-212ENST00000556767 CSTL1Q9H114 145 aa8.45□□□□□ -1.06
CCDC88C-212ENST00000556767 A0A087X0K7 114 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 BORCS7-ASMTA0A0B4J1R7 106 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 KIR2DL5BA0A0G2JN68 375 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 KIR2DL5BA0A0G2JPC4 375 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 UBE2CO00762 179 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 DEFB135Q30KP9 77 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 SPATA31B1PQ5VZV4 182 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 EBLN2Q6P2I7 272 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 MIR17HGQ75NE6 70 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 KIR2DL5AQ8N109 375 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 RNF182Q8N6D2 247 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 KIR2DL5BQ8NHK3 375 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 C20orf173Q96LM9 149 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 C17orf77Q96MU5 243 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 MRPL32Q9BYC8 188 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 RPRMQ9NS64 109 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 RFNGQ9Y644 331 aa8.44□□□□□ -1.06
CCDC88C-212ENST00000556767 TRAV8-2A0A0B4J237 113 aa8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 F6UB75 175 aa8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 MRPS12O15235 138 aaKnown RBP8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 CA1P00915 261 aaPredicted RBP8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 IGKV3-20P01619 116 aa8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 ACOT6Q3I5F7 207 aaPredicted RBP8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 GDF5OSQ5U4N7 250 aa8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 RPL7L1Q6DKI1 246 aaKnown RBP8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 LCN15Q6UWW0 184 aa8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 FOXI2Q6ZQN5 318 aa8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 TRPT1Q86TN4 253 aaKnown RBP8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 ZNF738Q8NE65 137 aa8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 OR4B1Q8NGF8 309 aa8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 FUT9Q9Y231 359 aa8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 TIMM9Q9Y5J7 89 aa8.43□□□□□ -1.06
CCDC88C-212ENST00000556767 PRKDCP78527 4128 aaKnown RBP8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 H3BQ15 152 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 SPRY2O43597 315 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 IGLC2P0DOY2 106 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 PYYP10082 97 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms