RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 TM4SF20Q53R12 229 aa8.28□□□□□ -1.08
SHMT2-218ENST00000555213 KPRPQ5T749 579 aaPredicted RBP8.28□□□□□ -1.08
SHMT2-218ENST00000555213 LCN12Q6JVE5 192 aa8.28□□□□□ -1.08
SHMT2-218ENST00000555213 TOMM20LQ6UXN7 152 aa8.28□□□□□ -1.08
SHMT2-218ENST00000555213 IL34Q6ZMJ4 242 aa8.28□□□□□ -1.08
SHMT2-218ENST00000555213 OR51G1Q8NGK1 321 aa8.28□□□□□ -1.08
SHMT2-218ENST00000555213 OR2K2Q8NGT1 345 aa8.28□□□□□ -1.08
SHMT2-218ENST00000555213 TMEM231Q9H6L2 316 aa8.28□□□□□ -1.08
SHMT2-218ENST00000555213 SLC25A22Q9H936 323 aa8.28□□□□□ -1.08
SHMT2-218ENST00000555213 PFDN2Q9UHV9 154 aa8.28□□□□□ -1.08
SHMT2-218ENST00000555213 A0A1B0GV50 99 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 RAB19A4D1S5 217 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 MAP1LC3B2A6NCE7 125 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 ATP6V1G1O75348 118 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 IGLV1-51P01701 117 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 IL4P05112 153 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 S100A7P31151 101 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 CDC34P49427 236 aaPredicted RBP8.27□□□□□ -1.09
SHMT2-218ENST00000555213 EGFEM1PQ0D2K5 195 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 BEAN1Q3B7T3 259 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 FAM78BQ5VT40 261 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 GATAD1Q8WUU5 269 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 RNF125Q96EQ8 232 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 GRAMD2BQ96HH9 432 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 RARRES2Q99969 163 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 MAP1LC3BQ9GZQ8 125 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 ZFAND3Q9H8U3 227 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 KCNIP2Q9NS61 270 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 FUT9Q9Y231 359 aa8.27□□□□□ -1.09
SHMT2-218ENST00000555213 IGHV7-4-1A0A0J9YVY3 117 aa8.26□□□□□ -1.09
SHMT2-218ENST00000555213 A0A1W2PS18 150 aa8.26□□□□□ -1.09
SHMT2-218ENST00000555213 ZNF207O43670 478 aaKnown RBP8.26□□□□□ -1.09
SHMT2-218ENST00000555213 NPPCP23582 126 aa8.26□□□□□ -1.09
SHMT2-218ENST00000555213 RHOBP62745 196 aa8.26□□□□□ -1.09
SHMT2-218ENST00000555213 RBPMS2Q6ZRY4 209 aaKnown RBP8.26□□□□□ -1.09
SHMT2-218ENST00000555213 SUN5Q8TC36 379 aa8.26□□□□□ -1.09
SHMT2-218ENST00000555213 FAM210AQ96ND0 272 aa8.26□□□□□ -1.09
SHMT2-218ENST00000555213 UHRF2Q96PU4 802 aa8.26□□□□□ -1.09
SHMT2-218ENST00000555213 PBDC1Q9BVG4 233 aa8.26□□□□□ -1.09
SHMT2-218ENST00000555213 SLC25A2Q9BXI2 301 aa8.26□□□□□ -1.09
SHMT2-218ENST00000555213 DOK5Q9P104 306 aa8.26□□□□□ -1.09
SHMT2-218ENST00000555213 ZNF256Q9Y2P7 627 aaPredicted RBP8.26□□□□□ -1.09
SHMT2-218ENST00000555213 PKD1L1Q8TDX9 2849 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 A0A1W2PPV4 95 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 HYPMO75409 117 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 HBE1P02100 147 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 C8orf88P0DMB2 117 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 ORM2P19652 201 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 LYZP61626 148 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 USF2Q15853 346 aaPredicted RBP8.25□□□□□ -1.09
SHMT2-218ENST00000555213 GUK1Q16774 197 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 CD300EQ496F6 205 aaPredicted RBP8.25□□□□□ -1.09
SHMT2-218ENST00000555213 C10orf113Q5VZT2 155 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 S100A7AQ86SG5 101 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 CITED4Q96RK1 184 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 RHPN1-AS1Q9BWJ2 59 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 SMPXQ9UHP9 88 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 RABAC1Q9UI14 185 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 NOTCH1P46531 2555 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 TRRAPQ9Y4A5 3859 aa8.25□□□□□ -1.09
SHMT2-218ENST00000555213 ELOA3CA0A087WX78 387 aaPredicted RBP8.24□□□□□ -1.09
SHMT2-218ENST00000555213 IGHV3-49A0A0A0MS15 119 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 TRAV25A0A0B4J276 109 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 RBFOX3A6NFN3 312 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 MRPS12O15235 138 aaKnown RBP8.24□□□□□ -1.09
SHMT2-218ENST00000555213 ICAM4Q14773 271 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 GUCA2BQ16661 112 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 DEFB114Q30KQ6 69 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 TOR2AQ5JU69 321 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 ZNF506Q5JVG8 444 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 ADAMTSL5Q6ZMM2 481 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 LINC00305Q7Z4B0 112 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 GTSCR1Q86UQ5 136 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 OR1L4Q8NGR5 311 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 OR1B1Q8NGR6 318 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 C17orf77Q96MU5 243 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 MRPL32Q9BYC8 188 aaKnown RBP8.24□□□□□ -1.09
SHMT2-218ENST00000555213 MLXQ9UH92 298 aa8.24□□□□□ -1.09
SHMT2-218ENST00000555213 MEGF8Q7Z7M0 2845 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 LOC102723971A0A1B0GUV8 181 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 CHEK1O14757 476 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 COX7A2P2O60397 106 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 CXorf1O96002 111 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 ARL14EPLP0DKL9 152 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 GP9P14770 177 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 EDN2P20800 178 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 CRYBB3P26998 211 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 GCHFRP30047 84 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 KRTAP10-11P60412 298 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 HAGHQ16775 308 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 UQCC3Q6UW78 93 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 TMEM61Q8N0U2 210 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 PFDN5Q99471 154 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 RNF2Q99496 336 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 SHANK2-AS3Q9BTD1 123 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 SLC25A39Q9BZJ4 359 aaPredicted RBP8.23□□□□□ -1.09
SHMT2-218ENST00000555213 U3KQE9 123 aa8.23□□□□□ -1.09
SHMT2-218ENST00000555213 IGHV3OR16-13A0A075B7E8 117 aa8.22□□□□□ -1.09
SHMT2-218ENST00000555213 IGHV3-74A0A0B4J1X5 117 aa8.22□□□□□ -1.09
SHMT2-218ENST00000555213 TMEM218A2RU14 115 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms