RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 PVALBP20472 110 aaPredicted RBP8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 GALR1P47211 349 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 SULT1A1P50225 295 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 FXYD7P58549 80 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 SELENOTP62341 195 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 NHLH2Q02577 135 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 PMS2P11Q13670 270 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 MIC13Q5XKP0 118 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 RNF182Q8N6D2 247 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 SEPSECSQ9HD40 501 aaKnown RBP8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 UQCC1Q9NVA1 299 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 XCL2Q9UBD3 114 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 WDR83OSQ9Y284 106 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 RYR2Q92736 4967 aa8.43□□□□□ -1.06
CCDC88C-208ENST00000554165 TRAV8-2A0A0B4J237 113 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 UBE2L5PA0A1B0GUS4 154 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 SSNA1O43805 119 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 ZNF705DP0CH99 300 aaPredicted RBP8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 ZNF705BP0CI00 300 aaPredicted RBP8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 HLA-DRB4P13762 266 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 HLA-DMBP28068 263 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 CAMLGP49069 296 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 PSMB3P49720 205 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 RAP2BP61225 183 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 FGL1Q08830 312 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 VWC2Q2TAL6 325 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 DMRTA1Q5VZB9 504 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 ZNF546Q86UE3 836 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 CSNK1G2-AS1Q8NCQ2 148 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 GATAD1Q8WUU5 269 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 TMEM37Q8WXS4 190 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 C16orf92Q96LL3 132 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 RNF126Q9BV68 326 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 NMES1Q9C002 83 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 ARV1Q9H2C2 271 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 HLA-DRB4X5D2U9 266 aa8.42□□□□□ -1.06
CCDC88C-208ENST00000554165 H3BTX0 84 aa8.41□□□□□ -1.06
CCDC88C-208ENST00000554165 ISLRO14498 428 aa8.41□□□□□ -1.06
CCDC88C-208ENST00000554165 MRPS12O15235 138 aaKnown RBP8.41□□□□□ -1.06
CCDC88C-208ENST00000554165 SPP1P10451 314 aa8.41□□□□□ -1.06
CCDC88C-208ENST00000554165 ID1P41134 155 aa8.41□□□□□ -1.06
CCDC88C-208ENST00000554165 SAV1Q9H4B6 383 aaPredicted RBP8.41□□□□□ -1.06
CCDC88C-208ENST00000554165 ALG5Q9Y673 324 aa8.41□□□□□ -1.06
CCDC88C-208ENST00000554165 TRAV5A0A0B4J249 113 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 COX7A2P2O60397 106 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 RBMY1A1P0DJD3 496 aaKnown RBP8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 RBMY1CP0DJD4 496 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 FGF7P21781 194 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 S100A11P31949 105 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 PRR20EP86478 221 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 PRR20CP86479 221 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 PRR20DP86480 221 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 PRR20BP86481 221 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 PRR20AP86496 221 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 BAXQ07812 192 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 CLINT1Q14677 625 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 RBMY1FQ15415 496 aaKnown RBP8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 GCSAMLQ5JQS6 135 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 FAM78BQ5VT40 261 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 MORN3Q6PF18 240 aaPredicted RBP8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 FOXI2Q6ZQN5 318 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 LINC00305Q7Z4B0 112 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 STX12Q86Y82 276 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 Q8NAQ8 132 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 OR4B1Q8NGF8 309 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 THAP6Q8TBB0 222 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 PPP1R1CQ8WVI7 109 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 SLC35B3Q9H1N7 401 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 X6R8D5 127 aa8.4□□□□□ -1.06
CCDC88C-208ENST00000554165 SACSQ9NZJ4 4579 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 IGHV4-28A0A0C4DH34 117 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 A0A0J9YX75 114 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 CXorf65A6NEN9 183 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 E5RGE8 158 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 RLN2P04090 185 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 RPL7P18124 248 aaKnown RBP8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 ATF4P18848 351 aaPredicted RBP8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 CXCL3P19876 107 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 MEOX2P50222 304 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 NANOS2P60321 138 aaKnown RBP8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 HBG1P69891 147 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 HBG2P69892 147 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 OPCMLQ14982 345 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 C10orf113Q5VZT2 155 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 ZNF709Q8N972 641 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 OR5C1Q8NGR4 320 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 GPR82Q96P67 336 aa8.39□□□□□ -1.07
CCDC88C-208ENST00000554165 ZNF705EA8MWA4 302 aaPredicted RBP8.38□□□□□ -1.07
CCDC88C-208ENST00000554165 H3BQ15 152 aa8.38□□□□□ -1.07
CCDC88C-208ENST00000554165 MPC2O95563 127 aa8.38□□□□□ -1.07
CCDC88C-208ENST00000554165 CYCSP99999 105 aaKnown RBP8.38□□□□□ -1.07
CCDC88C-208ENST00000554165 RAB31Q13636 194 aa8.38□□□□□ -1.07
CCDC88C-208ENST00000554165 DNAJC4Q9NNZ3 241 aa8.38□□□□□ -1.07
CCDC88C-208ENST00000554165 RPRMQ9NS64 109 aa8.38□□□□□ -1.07
CCDC88C-208ENST00000554165 SLC39A9Q9NUM3 307 aa8.38□□□□□ -1.07
CCDC88C-208ENST00000554165 MBD2Q9UBB5 411 aa8.38□□□□□ -1.07
CCDC88C-208ENST00000554165 PXMP4Q9Y6I8 212 aa8.38□□□□□ -1.07
CCDC88C-208ENST00000554165 HYDINQ4G0P3 5121 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 ELOA3CA0A087WX78 387 aaPredicted RBP8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 A0A087X0K7 114 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms