RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 C17orf77Q96MU5 243 aa10.43□□□□□ -0.74
PTCH1-226ENST00000553011 ATP5SQ99766 215 aa10.43□□□□□ -0.74
PTCH1-226ENST00000553011 RSG1Q9BU20 258 aa10.43□□□□□ -0.74
PTCH1-226ENST00000553011 ZMAT4Q9H898 229 aa10.43□□□□□ -0.74
PTCH1-226ENST00000553011 SLC39A9Q9NUM3 307 aa10.43□□□□□ -0.74
PTCH1-226ENST00000553011 PXMP4Q9Y6I8 212 aa10.43□□□□□ -0.74
PTCH1-226ENST00000553011 KNCNA6PVL3 124 aa10.42□□□□□ -0.74
PTCH1-226ENST00000553011 SOCS3O14543 225 aa10.42□□□□□ -0.74
PTCH1-226ENST00000553011 MPDU1O75352 247 aa10.42□□□□□ -0.74
PTCH1-226ENST00000553011 MORN5Q5VZ52 161 aa10.42□□□□□ -0.74
PTCH1-226ENST00000553011 C10orf113Q5VZT2 155 aa10.42□□□□□ -0.74
PTCH1-226ENST00000553011 Q6ZRG5 221 aa10.42□□□□□ -0.74
PTCH1-226ENST00000553011 LINC00305Q7Z4B0 112 aa10.42□□□□□ -0.74
PTCH1-226ENST00000553011 ASB13Q8WXK3 278 aa10.42□□□□□ -0.74
PTCH1-226ENST00000553011 RCHY1Q96PM5 261 aa10.42□□□□□ -0.74
PTCH1-226ENST00000553011 SPATA25Q9BR10 227 aa10.42□□□□□ -0.74
PTCH1-226ENST00000553011 WDR61Q9GZS3 305 aaKnown RBP10.42□□□□□ -0.74
PTCH1-226ENST00000553011 WFDC1Q9HC57 220 aa10.42□□□□□ -0.74
PTCH1-226ENST00000553011 ELOA3CA0A087WX78 387 aaPredicted RBP10.41□□□□□ -0.74
PTCH1-226ENST00000553011 SNRPD3P62318 126 aaKnown RBP10.41□□□□□ -0.74
PTCH1-226ENST00000553011 FGL1Q08830 312 aa10.41□□□□□ -0.74
PTCH1-226ENST00000553011 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.41□□□□□ -0.74
PTCH1-226ENST00000553011 OR2T35Q8NGX2 323 aa10.41□□□□□ -0.74
PTCH1-226ENST00000553011 GPR82Q96P67 336 aa10.41□□□□□ -0.74
PTCH1-226ENST00000553011 SEPSECSQ9HD40 501 aaKnown RBP10.41□□□□□ -0.74
PTCH1-226ENST00000553011 DNAJC4Q9NNZ3 241 aa10.41□□□□□ -0.74
PTCH1-226ENST00000553011 RPL7P18124 248 aaKnown RBP10.4□□□□□ -0.74
PTCH1-226ENST00000553011 ATF4P18848 351 aaPredicted RBP10.4□□□□□ -0.74
PTCH1-226ENST00000553011 DEFB1P60022 68 aa10.4□□□□□ -0.74
PTCH1-226ENST00000553011 GCSAMLQ5JQS6 135 aa10.4□□□□□ -0.74
PTCH1-226ENST00000553011 S100A7AQ86SG5 101 aa10.4□□□□□ -0.74
PTCH1-226ENST00000553011 OR1L4Q8NGR5 311 aa10.4□□□□□ -0.74
PTCH1-226ENST00000553011 LINC00052Q96N35 136 aa10.4□□□□□ -0.74
PTCH1-226ENST00000553011 FXYD6-FXYD2A0A087WZ82 144 aa10.39□□□□□ -0.75
PTCH1-226ENST00000553011 TRAV5A0A0B4J249 113 aa10.39□□□□□ -0.75
PTCH1-226ENST00000553011 G3V3Q6 166 aa10.39□□□□□ -0.75
PTCH1-226ENST00000553011 MRPS12O15235 138 aaKnown RBP10.39□□□□□ -0.75
PTCH1-226ENST00000553011 ID1P41134 155 aa10.39□□□□□ -0.75
PTCH1-226ENST00000553011 PSMB3P49720 205 aa10.39□□□□□ -0.75
PTCH1-226ENST00000553011 MEOX2P50222 304 aa10.39□□□□□ -0.75
PTCH1-226ENST00000553011 APOC4P55056 127 aa10.39□□□□□ -0.75
PTCH1-226ENST00000553011 ACTL10Q5JWF8 245 aa10.39□□□□□ -0.75
PTCH1-226ENST00000553011 C16orf92Q96LL3 132 aa10.39□□□□□ -0.75
PTCH1-226ENST00000553011 AQP10Q96PS8 301 aa10.39□□□□□ -0.75
PTCH1-226ENST00000553011 PFDN5Q99471 154 aa10.39□□□□□ -0.75
PTCH1-226ENST00000553011 KIR2DL5BA0A0G2JN68 375 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 KIR2DL5BA0A0G2JPC4 375 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 ISLRO14498 428 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 IFNA5P01569 189 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 SNRPCP09234 159 aaKnown RBP10.38□□□□□ -0.75
PTCH1-226ENST00000553011 IGFL4Q6B9Z1 124 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 STHQ8IWL8 128 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 KIR2DL5AQ8N109 375 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 ZNF709Q8N972 641 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 KIR2DL5BQ8NHK3 375 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 SCGB1C1Q8TD33 95 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 C20orf173Q96LM9 149 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 RFNGQ9Y644 331 aa10.38□□□□□ -0.75
PTCH1-226ENST00000553011 A0A087X0K7 114 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 TRAV8-2A0A0B4J237 113 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 RNF222A6NCQ9 220 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 C17orf112F2Z3M2 114 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 SMLR1H3BR10 107 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 DEFB135Q30KP9 77 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 GDF5OSQ5U4N7 250 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 TRPT1Q86TN4 253 aaKnown RBP10.37□□□□□ -0.75
PTCH1-226ENST00000553011 BPIFA4PQ86YQ2 179 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 GATAD1Q8WUU5 269 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 OVOL2Q9BRP0 275 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 CSTL1Q9H114 145 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 KCNIP2Q9NS61 270 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 TNFSF18Q9UNG2 199 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 RNF24Q9Y225 148 aa10.37□□□□□ -0.75
PTCH1-226ENST00000553011 H3BTX0 84 aa10.36□□□□□ -0.75
PTCH1-226ENST00000553011 UBE2CO00762 179 aa10.36□□□□□ -0.75
PTCH1-226ENST00000553011 SAMD13Q5VXD3 122 aa10.36□□□□□ -0.75
PTCH1-226ENST00000553011 SPATA31B1PQ5VZV4 182 aa10.36□□□□□ -0.75
PTCH1-226ENST00000553011 RNF182Q8N6D2 247 aa10.36□□□□□ -0.75
PTCH1-226ENST00000553011 INO80EQ8NBZ0 244 aaPredicted RBP10.36□□□□□ -0.75
PTCH1-226ENST00000553011 PARD6GQ9BYG4 376 aaPredicted RBP10.36□□□□□ -0.75
PTCH1-226ENST00000553011 F6UB75 175 aa10.35□□□□□ -0.75
PTCH1-226ENST00000553011 H3BMM0 161 aa10.35□□□□□ -0.75
PTCH1-226ENST00000553011 HLA-DRB4P13762 266 aa10.35□□□□□ -0.75
PTCH1-226ENST00000553011 HLA-DMBP28068 263 aa10.35□□□□□ -0.75
PTCH1-226ENST00000553011 FFAR4Q5NUL3 377 aa10.35□□□□□ -0.75
PTCH1-226ENST00000553011 FAM78BQ5VT40 261 aa10.35□□□□□ -0.75
PTCH1-226ENST00000553011 Q6ZWC4 215 aa10.35□□□□□ -0.75
PTCH1-226ENST00000553011 HLA-DRB4X5D2U9 266 aa10.35□□□□□ -0.75
PTCH1-226ENST00000553011 H3BQ15 152 aa10.34□□□□□ -0.75
PTCH1-226ENST00000553011 SLC17A3O00476 420 aa10.34□□□□□ -0.75
PTCH1-226ENST00000553011 CA1P00915 261 aaPredicted RBP10.34□□□□□ -0.75
PTCH1-226ENST00000553011 GIG44P09565 113 aaPredicted RBP10.34□□□□□ -0.75
PTCH1-226ENST00000553011 IGLC2P0DOY2 106 aa10.34□□□□□ -0.75
PTCH1-226ENST00000553011 C4BPBP20851 252 aa10.34□□□□□ -0.75
PTCH1-226ENST00000553011 Q6ZNX1 250 aa10.34□□□□□ -0.75
PTCH1-226ENST00000553011 FOXI2Q6ZQN5 318 aa10.34□□□□□ -0.75
PTCH1-226ENST00000553011 MIR17HGQ75NE6 70 aa10.34□□□□□ -0.75
PTCH1-226ENST00000553011 HSD17B11Q8NBQ5 300 aa10.34□□□□□ -0.75
PTCH1-226ENST00000553011 LRRC20Q8TCA0 184 aa10.34□□□□□ -0.75
PTCH1-226ENST00000553011 WWC2-AS2Q96NR7 200 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms