RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TBX15Q96SF7 602 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 V9GYV3 84 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 A0A087X0M5 115 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 TRAV40A0A0B4J280 105 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 A0A1B0GX30 115 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 HIGD1CA8MV81 97 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 TEX22C9J3V5 150 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 RNF224P0DH78 156 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 SRD5A1P18405 259 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 SAA4P35542 130 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 GPX4P36969 197 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 CEACAM3P40198 252 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 LCN12Q6JVE5 192 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 CLEC19AQ6UXS0 136 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 FXYD5Q96DB9 178 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 SLC25A39Q9BZJ4 359 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 LINC00574Q9H8X3 128 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 FBXL7Q9UJT9 491 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 EPDR1Q9UM22 224 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 IGKV2-40A0A087WW87 121 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-215ENST00000552823 ZNF785A8K8V0 405 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 IGKV1-17P01599 117 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 IGKV2D-40P01614 121 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-215ENST00000552823 C5orf64Q2M2E5 130 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 AARDQ4LEZ3 155 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 ETFRF1Q6IPR1 90 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 RNASEH2CQ8TDP1 164 aaKnown RBP4.42□□□□□ -1.7
LIMA1-215ENST00000552823 ARPC1AQ92747 370 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 RCHY1Q96PM5 261 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 PMCHL2Q9BQD1 86 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 ATG101Q9BSB4 218 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 NCOR1P1Q9H4R4 102 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 CHODLQ9H9P2 273 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 TMEM242Q9NWH2 141 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 ZNF586Q9NXT0 402 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 ZFHX3Q15911 3703 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 LOC389332A0A1B0GUA5 103 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 CLEC3BP05452 202 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 IGLC1P0CG04 106 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 SELENOTP62341 195 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 ACTL10Q5JWF8 245 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 LINC00311Q8N616 119 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 TMEM75Q8N9X5 138 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 CHRDL1Q9BU40 450 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 NF1P21359 2839 aa4.42□□□□□ -1.7
LIMA1-215ENST00000552823 ELOA3CA0A087WX78 387 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-215ENST00000552823 A0A1W2PRE2 83 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 K7EIM0 57 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 P01737 135 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 PRTN3P24158 256 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 SLAQ13239 276 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 WFDC3Q8IUB2 231 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 ZNF664Q8N3J9 261 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 SIGLECL1Q8N7X8 197 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 OR4F17Q8NGA8 305 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 ITLN2Q8WWU7 325 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-215ENST00000552823 RNF125Q96EQ8 232 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 IGHV4-61A0A0C4DH41 118 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 TSTD3H0UI37 97 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 IGLV2-8P01709 118 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 APCSP02743 223 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 RNF182Q8N6D2 247 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 NUP35Q8NFH5 326 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 C21orf62Q9NYP8 219 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 RNF114Q9Y508 228 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 FLNAP21333 2647 aaKnown RBP4.41□□□□□ -1.7
LIMA1-215ENST00000552823 FBN2P35556 2912 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 A0A1B0GV90 55 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 ATP6V0E1O15342 81 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 MAS1LP35410 378 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 TFPI2P48307 235 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 HIST2H2BCQ6DN03 193 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 OR4A5Q8NH83 315 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 C8orf49Q96NF6 230 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 PYGO2Q9BRQ0 406 aa4.41□□□□□ -1.7
LIMA1-215ENST00000552823 I3L2K1 104 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 HSBP1O75506 76 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 IGHV4-39P01824 125 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 MFAP4P55083 255 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 CTAG1AP78358 180 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 RHOGP84095 191 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 FOXL1Q12952 345 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 ERCC8Q13216 396 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 C15orf32Q32M92 178 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 C8orf46Q8TAG6 207 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 GLMPQ8WWB7 406 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 NEU4Q8WWR8 484 aaPredicted RBP4.4□□□□□ -1.7
LIMA1-215ENST00000552823 MRPL32Q9BYC8 188 aaKnown RBP4.4□□□□□ -1.7
LIMA1-215ENST00000552823 PRDM13Q9H4Q3 707 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 C7orf69Q9H7B7 122 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 CDC42EP3Q9UKI2 254 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 AGRNO00468 2067 aa4.4□□□□□ -1.7
LIMA1-215ENST00000552823 PSMB11A5LHX3 300 aa4.4□□□□□ -1.71
LIMA1-215ENST00000552823 NPIPB5A8MRT5 1133 aa4.4□□□□□ -1.71
LIMA1-215ENST00000552823 CHEK1O14757 476 aa4.4□□□□□ -1.71
LIMA1-215ENST00000552823 HLA-DRB1P01911 266 aa4.4□□□□□ -1.71
LIMA1-215ENST00000552823 TCRAP04437 139 aa4.4□□□□□ -1.71
LIMA1-215ENST00000552823 IGHV4-38-2P0DP08 117 aa4.4□□□□□ -1.71
LIMA1-215ENST00000552823 HOXB4P17483 251 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-215ENST00000552823 PDLIM4P50479 330 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms