RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 HAGHLQ6PII5 290 aaPredicted RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 GLIPR1L1Q6UWM5 242 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 SLC25A26Q70HW3 274 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 HIST2H3AQ71DI3 136 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF767PQ75MW2 155 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 TCF23Q7RTU1 214 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 Q8N402 240 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 LY6G5BQ8NDX9 201 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 OR4D11Q8NGI4 311 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 OR10X1Q8NGY0 326 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 OR4K15Q8NH41 348 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 OR4A5Q8NH83 315 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 TERB2Q8NHR7 220 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 ANGPTL6Q8NI99 470 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 VSTM2AQ8TAG5 236 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 SUN5Q8TC36 379 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 RPS4Y2Q8TD47 263 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 H1FXQ92522 213 aaKnown RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 HIST1H2BAQ96A08 127 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 ISOC1Q96CN7 298 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 CIB3Q96Q77 187 aaPredicted RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 PHB2Q99623 299 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 CMSS1Q9BQ75 279 aaKnown RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 C1QTNF6Q9BXI9 259 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 OR2J1Q9GZK6 312 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 CHST5Q9GZS9 411 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF286AQ9HBT8 521 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM106BQ9NUM4 274 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 FKBP14Q9NWM8 211 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 TXNL4BQ9NX01 149 aaKnown RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 PRELID1Q9Y255 219 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 U3KQK5 164 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 V9GYS6 101 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 ANK1P16157 1881 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 NUP210Q8TEM1 1887 aaPredicted RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 KIAA0100Q14667 2235 aaKnown RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 PLXNB1O43157 2135 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 SCN8AQ9UQD0 1980 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 DOCK3Q8IZD9 2030 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 MYO16Q9Y6X6 1858 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 PCNTO95613 3336 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 BORCS7-ASMTA0A0B4J1R7 106 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 IGHV1-18A0A0C4DH31 117 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 PQLC2LA1A4F0 135 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 OR4C45A6NMZ5 311 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 B4DEV8 164 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 ATP6V1G2-DDX39BF2Z307 99 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 J3QRE1 110 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 M0R1W7 72 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 CORTO00230 105 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 SDCBPO00560 298 aaPredicted RBP1.1□□□□□ -2.23
LIMA1-209ENST00000552008 FGF16O43320 207 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 SH2D1AO60880 128 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 CNIH1O95406 144 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 CDS2O95674 445 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 HAND1O96004 215 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 CFDP00746 253 aaPredicted RBP1.1□□□□□ -2.23
LIMA1-209ENST00000552008 IFNA7P01567 189 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 IFNA5P01569 189 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 RBP4P02753 201 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 CTSGP08311 255 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 FBP1P09467 338 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 LIMS3P0CW19 117 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 LIMS4P0CW20 117 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF728P0DKX0 622 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 DEFA4P12838 97 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 CCL1P22362 96 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 NFYAP23511 347 aaPredicted RBP1.1□□□□□ -2.23
LIMA1-209ENST00000552008 COL8A2P25067 703 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 SULT1A2P50226 295 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 MP68P56378 58 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 CCL8P80075 99 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 ERHP84090 104 aaKnown RBP1.1□□□□□ -2.23
LIMA1-209ENST00000552008 FAM3AP98173 230 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 FABP5Q01469 135 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 EDDM3AQ14507 147 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM249Q2WGJ8 235 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 VMA21Q3ZAQ7 101 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 OR10J3Q5JRS4 329 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 FAM162BQ5T6X4 162 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 LINC01590Q5TEZ4 76 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 MINOS1Q5TGZ0 78 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 HCP5Q6MZN7 132 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 CD200R1LQ6Q8B3 271 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 AKAP14Q86UN6 197 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 NAA40Q86UY6 237 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 NIT1Q86X76 327 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 SNX29P2Q8IUI4 249 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 OR5AS1Q8N127 324 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 C10orf111Q8N326 155 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 C12orf45Q8N5I9 185 aaPredicted RBP1.1□□□□□ -2.23
LIMA1-209ENST00000552008 ZIC4Q8N9L1 334 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM229BQ8NBD8 167 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.1□□□□□ -2.23
LIMA1-209ENST00000552008 OR51D1Q8NGF3 324 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 OR8B12Q8NGG6 310 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 OR51A4Q8NGJ6 313 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 OR8D4Q8NGM9 314 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 STOML3Q8TAV4 291 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 MUC7Q8TAX7 377 aa1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms