RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 TMEM241Q24JQ0 296 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 LUZP6Q538Z0 58 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 CENPWQ5EE01 88 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 HIST2H3PS2Q5TEC6 136 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 SMARCD3Q6STE5 483 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 NTM-AS1Q6ZSK4 140 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 HIST2H3AQ71DI3 136 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 PRNTQ86SH4 94 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 NATD1Q8N6N6 113 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 OR8J2Q8NGG1 315 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 OR4D11Q8NGI4 311 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 LEAP2Q969E1 77 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 PPP1R36Q96LQ0 422 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 PACRGQ96M98 296 aaPredicted RBP2.41□□□□□ -2.02
LIMA1-208ENST00000551691 THTPAQ9BU02 230 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 TLNRD1Q9H1K6 362 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 ABCG5Q9H222 651 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 OR51E2Q9H255 320 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 ZNF286AQ9HBT8 521 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 ZNF706Q9Y5V0 76 aaPredicted RBP2.41□□□□□ -2.02
LIMA1-208ENST00000551691 DSCAML1Q8TD84 2053 aa2.41□□□□□ -2.02
LIMA1-208ENST00000551691 PGRMC1O00264 195 aaKnown RBP2.4□□□□□ -2.03
LIMA1-208ENST00000551691 IFNA10P01566 189 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 LINC00614P0C842 121 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 RPS27P42677 84 aaKnown RBP2.4□□□□□ -2.03
LIMA1-208ENST00000551691 OR1E2P47887 323 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 REG1BP48304 166 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 TCTAP57738 103 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 KRTAP10-1P60331 282 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 RAB2AP61019 212 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 EDDM3AQ14507 147 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 LELP1Q5T871 98 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 ZFP2Q6ZN57 461 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 OR6V1Q8N148 313 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 OR8A1Q8NGG7 326 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 ZNF714Q96N38 554 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 PRSS27Q9BQR3 290 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 CHST5Q9GZS9 411 aa2.4□□□□□ -2.03
LIMA1-208ENST00000551691 ZNF430Q9H8G1 570 aaPredicted RBP2.4□□□□□ -2.03
LIMA1-208ENST00000551691 YTHDF2Q9Y5A9 579 aaKnown RBP2.4□□□□□ -2.03
LIMA1-208ENST00000551691 TRAV27A0A087WT01 109 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 TINCRA0A1B0GVN0 87 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 B4DEV8 164 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 K7EPK0 472 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 K7ERS5 55 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 BET1O15155 118 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 RPP14O95059 124 aaKnown RBP2.39□□□□□ -2.03
LIMA1-208ENST00000551691 CDRT1O95170 752 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 CA2P00918 260 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 SERPINA1P01009 418 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 IFNA5P01569 189 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 ISG15P05161 165 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 LGALS1P09382 135 aaKnown RBP2.39□□□□□ -2.03
LIMA1-208ENST00000551691 TSPAN19P0C672 248 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 AZU1P20160 251 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 CDK2P24941 298 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 PSMA1P25786 263 aaKnown RBP2.39□□□□□ -2.03
LIMA1-208ENST00000551691 MP68P56378 58 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 GABARAPL2P60520 117 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 LSM6P62312 80 aaKnown RBP2.39□□□□□ -2.03
LIMA1-208ENST00000551691 MLLT11Q13015 90 aaPredicted RBP2.39□□□□□ -2.03
LIMA1-208ENST00000551691 LCE3EQ5T5B0 92 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 RASSF6Q6ZTQ3 369 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 C10orf67Q8IYJ2 551 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 ZNF561Q8N587 486 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 OR5P3Q8WZ94 311 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 FXYD5Q96DB9 178 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 PPP3R2Q96LZ3 170 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 Q96M85 177 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 SDHCQ99643 169 aaPredicted RBP2.39□□□□□ -2.03
LIMA1-208ENST00000551691 MROQ9BYG7 248 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 ZNF436Q9C0F3 470 aaPredicted RBP2.39□□□□□ -2.03
LIMA1-208ENST00000551691 EIF5A2Q9GZV4 153 aaKnown RBP2.39□□□□□ -2.03
LIMA1-208ENST00000551691 CHST6Q9GZX3 395 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 BABAM2Q9NXR7 383 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 RBM12B-AS1Q9P1G2 102 aa2.39□□□□□ -2.03
LIMA1-208ENST00000551691 TMEM210A6NLX4 147 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 M0R135 149 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 FFAR1O14842 300 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 CHP2O43745 196 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 DCTN3O75935 186 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 KRT75O95678 551 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 HBZP02008 142 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 CD74P04233 296 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 P0DMU3 169 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 FAM231AP0DMU4 169 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 FAM231CP0DMU5 169 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 GTF2F2P13984 249 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 GADD45AP24522 165 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 NFYBP25208 207 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 HLA-DMBP28068 263 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 ALDH3A1P30838 453 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 S100A3P33764 101 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 CMC4P56277 68 aaPredicted RBP2.38□□□□□ -2.03
LIMA1-208ENST00000551691 NCALDP61601 193 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 DEFA5Q01523 94 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 EMX2Q04743 252 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 FADDQ13158 208 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 PRDX4Q13162 271 aa2.38□□□□□ -2.03
LIMA1-208ENST00000551691 PPP1R1AQ13522 171 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms