RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 PSG9Q00887 426 aa11.73□□□□□ -0.53
VPS29-207ENST00000549970 FGL1Q08830 312 aa11.73□□□□□ -0.53
VPS29-207ENST00000549970 TMEM14EPQ6UXP3 125 aa11.73□□□□□ -0.53
VPS29-207ENST00000549970 ZBTB8BQ8NAP8 495 aaPredicted RBP11.73□□□□□ -0.53
VPS29-207ENST00000549970 MITD1Q8WV92 249 aa11.73□□□□□ -0.53
VPS29-207ENST00000549970 CLUHP3Q96NS8 147 aa11.73□□□□□ -0.53
VPS29-207ENST00000549970 GPR82Q96P67 336 aa11.73□□□□□ -0.53
VPS29-207ENST00000549970 NEU1Q99519 415 aa11.73□□□□□ -0.53
VPS29-207ENST00000549970 SLC25A39Q9BZJ4 359 aaPredicted RBP11.73□□□□□ -0.53
VPS29-207ENST00000549970 C20orf85Q9H1P6 137 aa11.73□□□□□ -0.53
VPS29-207ENST00000549970 HIGD1AQ9Y241 93 aa11.73□□□□□ -0.53
VPS29-207ENST00000549970 DEFB131BA0A096LNP1 70 aa11.72□□□□□ -0.53
VPS29-207ENST00000549970 DLK1P80370 383 aa11.72□□□□□ -0.53
VPS29-207ENST00000549970 IGFL4Q6B9Z1 124 aa11.72□□□□□ -0.53
VPS29-207ENST00000549970 RCL1Q9Y2P8 373 aaKnown RBP11.72□□□□□ -0.53
VPS29-207ENST00000549970 GOLT1BQ9Y3E0 138 aa11.72□□□□□ -0.53
VPS29-207ENST00000549970 SMIM9A6NGZ8 99 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 CCSO14618 274 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 PLA2G10O15496 165 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 LYRM1O43325 122 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 HYPMO75409 117 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 OR5G3P0C626 314 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 CNPY1Q3B7I2 92 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 OR10P1Q8NGE3 313 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 UHRF2Q96PU4 802 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 SHANK2-AS3Q9BTD1 123 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 RNF126Q9BV68 326 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 NPVFQ9HCQ7 196 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 MGAT4CQ9UBM8 478 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 RFNGQ9Y644 331 aa11.71□□□□□ -0.53
VPS29-207ENST00000549970 TRAV6A0A075B6T7 132 aa11.7□□□□□ -0.54
VPS29-207ENST00000549970 TMEM189A5PLL7 270 aa11.7□□□□□ -0.54
VPS29-207ENST00000549970 TSC22D2O75157 780 aa11.7□□□□□ -0.54
VPS29-207ENST00000549970 SPART-AS1P0CW21 52 aa11.7□□□□□ -0.54
VPS29-207ENST00000549970 SELENOTP62341 195 aa11.7□□□□□ -0.54
VPS29-207ENST00000549970 SLC38A11Q08AI6 406 aa11.7□□□□□ -0.54
VPS29-207ENST00000549970 C1orf158Q8N1D5 194 aa11.7□□□□□ -0.54
VPS29-207ENST00000549970 RNF182Q8N6D2 247 aa11.7□□□□□ -0.54
VPS29-207ENST00000549970 ARL6Q9H0F7 186 aa11.7□□□□□ -0.54
VPS29-207ENST00000549970 TRAV8-2A0A0B4J237 113 aa11.69□□□□□ -0.54
VPS29-207ENST00000549970 FAM25EA8MYX2 175 aa11.69□□□□□ -0.54
VPS29-207ENST00000549970 MBPP02686 304 aaPredicted RBP11.69□□□□□ -0.54
VPS29-207ENST00000549970 RPL7P18124 248 aaKnown RBP11.69□□□□□ -0.54
VPS29-207ENST00000549970 TAS2R30P59541 319 aa11.69□□□□□ -0.54
VPS29-207ENST00000549970 PLP1P60201 277 aa11.69□□□□□ -0.54
VPS29-207ENST00000549970 ARL16Q0P5N6 197 aa11.69□□□□□ -0.54
VPS29-207ENST00000549970 TEPPQ6URK8 271 aa11.69□□□□□ -0.54
VPS29-207ENST00000549970 NDUFA13Q9P0J0 144 aa11.69□□□□□ -0.54
VPS29-207ENST00000549970 C7orf66A4D0T2 115 aa11.68□□□□□ -0.54
VPS29-207ENST00000549970 FNDC10F2Z333 226 aa11.68□□□□□ -0.54
VPS29-207ENST00000549970 HBE1P02100 147 aa11.68□□□□□ -0.54
VPS29-207ENST00000549970 AMBPP02760 352 aa11.68□□□□□ -0.54
VPS29-207ENST00000549970 TCRBP04435 133 aa11.68□□□□□ -0.54
VPS29-207ENST00000549970 CNN1P51911 297 aaKnown RBP11.68□□□□□ -0.54
VPS29-207ENST00000549970 ZNF846Q147U1 533 aa11.68□□□□□ -0.54
VPS29-207ENST00000549970 AMTNQ6UX39 209 aa11.68□□□□□ -0.54
VPS29-207ENST00000549970 ZNF738Q8NE65 137 aa11.68□□□□□ -0.54
VPS29-207ENST00000549970 TMEM208Q9BTX3 173 aa11.68□□□□□ -0.54
VPS29-207ENST00000549970 NUDT15Q9NV35 164 aa11.68□□□□□ -0.54
VPS29-207ENST00000549970 DKK2Q9UBU2 259 aa11.68□□□□□ -0.54
VPS29-207ENST00000549970 LOC102723971A0A1B0GUV8 181 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 A8MTW9 85 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 L7N2F9 121 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 DUSP14O95147 198 aaKnown RBP11.67□□□□□ -0.54
VPS29-207ENST00000549970 VAMP2P63027 116 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 SPINK13Q1W4C9 94 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 RRN3P1Q2M238 152 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 FAM222AQ5U5X8 452 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 PATE2Q6UY27 113 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 OR11H7Q8NGC8 314 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 IGF2BP2-AS1Q96M15 143 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 SEC22CQ9BRL7 303 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 NDUFAF3Q9BU61 184 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 ARV1Q9H2C2 271 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 LSM5Q9Y4Y9 91 aaKnown RBP11.67□□□□□ -0.54
VPS29-207ENST00000549970 HECTD4Q9Y4D8 3996 aa11.67□□□□□ -0.54
VPS29-207ENST00000549970 K7EPK0 472 aa11.66□□□□□ -0.54
VPS29-207ENST00000549970 M0R2Z0 102 aa11.66□□□□□ -0.54
VPS29-207ENST00000549970 GOSR2O14653 212 aa11.66□□□□□ -0.54
VPS29-207ENST00000549970 AGPAT2O15120 278 aa11.66□□□□□ -0.54
VPS29-207ENST00000549970 S100A7AQ86SG5 101 aa11.66□□□□□ -0.54
VPS29-207ENST00000549970 NIPSNAP3BQ9BS92 247 aa11.66□□□□□ -0.54
VPS29-207ENST00000549970 PLA2G2EQ9NZK7 142 aa11.66□□□□□ -0.54
VPS29-207ENST00000549970 YTHDF2Q9Y5A9 579 aaKnown RBP11.66□□□□□ -0.54
VPS29-207ENST00000549970 DNAH2Q9P225 4427 aa11.66□□□□□ -0.54
VPS29-207ENST00000549970 A0A087X0K7 114 aa11.65□□□□□ -0.54
VPS29-207ENST00000549970 TEX48A0A1B0GUV7 120 aa11.65□□□□□ -0.54
VPS29-207ENST00000549970 C5orf51A6NDU8 294 aa11.65□□□□□ -0.54
VPS29-207ENST00000549970 PRB4P10163 310 aaPredicted RBP11.65□□□□□ -0.54
VPS29-207ENST00000549970 BCAP31P51572 246 aa11.65□□□□□ -0.54
VPS29-207ENST00000549970 HIST1H1AQ02539 215 aaPredicted RBP11.65□□□□□ -0.54
VPS29-207ENST00000549970 ZNF546Q86UE3 836 aa11.65□□□□□ -0.54
VPS29-207ENST00000549970 LRRC20Q8TCA0 184 aa11.65□□□□□ -0.54
VPS29-207ENST00000549970 ZNF431Q8TF32 576 aaPredicted RBP11.65□□□□□ -0.54
VPS29-207ENST00000549970 GGACTQ9BVM4 153 aa11.65□□□□□ -0.54
VPS29-207ENST00000549970 INSP01308 110 aa11.64□□□□□ -0.55
VPS29-207ENST00000549970 SNRPCP09234 159 aaKnown RBP11.64□□□□□ -0.55
VPS29-207ENST00000549970 HTN3P15516 51 aa11.64□□□□□ -0.55
VPS29-207ENST00000549970 CXCL3P19876 107 aa11.64□□□□□ -0.55
VPS29-207ENST00000549970 CAV2P51636 162 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 124.7 ms