RNA–Protein interactions for RNA: ENST00000546296.5

LTBR-215, Transcript of lymphotoxin beta receptor, humanhuman

TSL 4

Gene LTBR, Length 783 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-215ENST00000546296 PRR20CP86479 221 aa12.49□□□□□ -0.41
LTBR-215ENST00000546296 PRR20DP86480 221 aa12.49□□□□□ -0.41
LTBR-215ENST00000546296 PRR20BP86481 221 aa12.49□□□□□ -0.41
LTBR-215ENST00000546296 PRR20AP86496 221 aa12.49□□□□□ -0.41
LTBR-215ENST00000546296 ZNF124Q15973 351 aa12.49□□□□□ -0.41
LTBR-215ENST00000546296 HAGHQ16775 308 aa12.49□□□□□ -0.41
LTBR-215ENST00000546296 LINC00305Q7Z4B0 112 aa12.49□□□□□ -0.41
LTBR-215ENST00000546296 INO80EQ8NBZ0 244 aaPredicted RBP12.49□□□□□ -0.41
LTBR-215ENST00000546296 CITED4Q96RK1 184 aa12.49□□□□□ -0.41
LTBR-215ENST00000546296 WDR61Q9GZS3 305 aaKnown RBP12.49□□□□□ -0.41
LTBR-215ENST00000546296 ZMAT4Q9H898 229 aa12.49□□□□□ -0.41
LTBR-215ENST00000546296 C17orf112F2Z3M2 114 aa12.48□□□□□ -0.41
LTBR-215ENST00000546296 RPL7P18124 248 aaKnown RBP12.48□□□□□ -0.41
LTBR-215ENST00000546296 ATF4P18848 351 aaPredicted RBP12.48□□□□□ -0.41
LTBR-215ENST00000546296 ID1P41134 155 aa12.48□□□□□ -0.41
LTBR-215ENST00000546296 PSMG4Q5JS54 123 aa12.48□□□□□ -0.41
LTBR-215ENST00000546296 LINC00322Q6ZN03 302 aaPredicted RBP12.48□□□□□ -0.41
LTBR-215ENST00000546296 TMEM37Q8WXS4 190 aa12.48□□□□□ -0.41
LTBR-215ENST00000546296 PFDN5Q99471 154 aa12.48□□□□□ -0.41
LTBR-215ENST00000546296 KCNIP2Q9NS61 270 aa12.48□□□□□ -0.41
LTBR-215ENST00000546296 RPL35AP18077 110 aaKnown RBP12.47□□□□□ -0.41
LTBR-215ENST00000546296 MEOX2P50222 304 aa12.47□□□□□ -0.41
LTBR-215ENST00000546296 LINC00052Q96N35 136 aa12.47□□□□□ -0.41
LTBR-215ENST00000546296 AQP10Q96PS8 301 aa12.47□□□□□ -0.41
LTBR-215ENST00000546296 WFDC1Q9HC57 220 aa12.47□□□□□ -0.41
LTBR-215ENST00000546296 SEPSECSQ9HD40 501 aaKnown RBP12.47□□□□□ -0.41
LTBR-215ENST00000546296 SAMD13Q5VXD3 122 aa12.46□□□□□ -0.41
LTBR-215ENST00000546296 C16orf92Q96LL3 132 aa12.46□□□□□ -0.41
LTBR-215ENST00000546296 APOC4P55056 127 aa12.45□□□□□ -0.42
LTBR-215ENST00000546296 STHQ8IWL8 128 aa12.45□□□□□ -0.42
LTBR-215ENST00000546296 GATAD1Q8WUU5 269 aa12.45□□□□□ -0.42
LTBR-215ENST00000546296 COL7A1Q02388 2944 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 KNCNA6PVL3 124 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 SMLR1H3BR10 107 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 ISLRO14498 428 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 PSMB3P49720 205 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 BPIFA4PQ86YQ2 179 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 LRRC20Q8TCA0 184 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 SPATA25Q9BR10 227 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 TM2D3Q9BRN9 247 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 TNFSF18Q9UNG2 199 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 U3KQK5 164 aa12.44□□□□□ -0.42
LTBR-215ENST00000546296 TRAV5A0A0B4J249 113 aa12.43□□□□□ -0.42
LTBR-215ENST00000546296 ZNF266Q14584 549 aa12.43□□□□□ -0.42
LTBR-215ENST00000546296 GCSAMLQ5JQS6 135 aa12.43□□□□□ -0.42
LTBR-215ENST00000546296 ACTL10Q5JWF8 245 aa12.43□□□□□ -0.42
LTBR-215ENST00000546296 FFAR4Q5NUL3 377 aa12.43□□□□□ -0.42
LTBR-215ENST00000546296 MORN5Q5VZ52 161 aa12.43□□□□□ -0.42
LTBR-215ENST00000546296 Q6ZNX1 250 aa12.43□□□□□ -0.42
LTBR-215ENST00000546296 PARD6GQ9BYG4 376 aaPredicted RBP12.43□□□□□ -0.42
LTBR-215ENST00000546296 DNAH9Q9NYC9 4486 aa12.42□□□□□ -0.42
LTBR-215ENST00000546296 SOCS3O14543 225 aa12.42□□□□□ -0.42
LTBR-215ENST00000546296 FAM78BQ5VT40 261 aa12.42□□□□□ -0.42
LTBR-215ENST00000546296 RCHY1Q96PM5 261 aa12.42□□□□□ -0.42
LTBR-215ENST00000546296 KIR2DL5BA0A0G2JN68 375 aa12.41□□□□□ -0.42
LTBR-215ENST00000546296 KIR2DL5BA0A0G2JPC4 375 aa12.41□□□□□ -0.42
LTBR-215ENST00000546296 G3V3Q6 166 aa12.41□□□□□ -0.42
LTBR-215ENST00000546296 UBE2CO00762 179 aa12.41□□□□□ -0.42
LTBR-215ENST00000546296 ARPC5O15511 151 aa12.41□□□□□ -0.42
LTBR-215ENST00000546296 SNRPCP09234 159 aaKnown RBP12.41□□□□□ -0.42
LTBR-215ENST00000546296 NBEAL2Q6ZNJ1 2754 aa12.41□□□□□ -0.42
LTBR-215ENST00000546296 KIR2DL5AQ8N109 375 aa12.41□□□□□ -0.42
LTBR-215ENST00000546296 KIR2DL5BQ8NHK3 375 aa12.41□□□□□ -0.42
LTBR-215ENST00000546296 C17orf77Q96MU5 243 aa12.41□□□□□ -0.42
LTBR-215ENST00000546296 CSTL1Q9H114 145 aa12.41□□□□□ -0.42
LTBR-215ENST00000546296 A0A087X0K7 114 aa12.4□□□□□ -0.42
LTBR-215ENST00000546296 BORCS7-ASMTA0A0B4J1R7 106 aa12.4□□□□□ -0.42
LTBR-215ENST00000546296 RNF222A6NCQ9 220 aa12.4□□□□□ -0.42
LTBR-215ENST00000546296 IGFL4Q6B9Z1 124 aa12.4□□□□□ -0.42
LTBR-215ENST00000546296 HSD17B11Q8NBQ5 300 aa12.4□□□□□ -0.42
LTBR-215ENST00000546296 MFFQ9GZY8 342 aa12.4□□□□□ -0.42
LTBR-215ENST00000546296 RETNQ9HD89 108 aa12.4□□□□□ -0.42
LTBR-215ENST00000546296 RPRMQ9NS64 109 aa12.4□□□□□ -0.42
LTBR-215ENST00000546296 hCG_2014768A0A024R1R8 64 aa12.39□□□□□ -0.43
LTBR-215ENST00000546296 MRPS12O15235 138 aaKnown RBP12.39□□□□□ -0.43
LTBR-215ENST00000546296 EBLN2Q6P2I7 272 aa12.39□□□□□ -0.43
LTBR-215ENST00000546296 MIR17HGQ75NE6 70 aa12.39□□□□□ -0.43
LTBR-215ENST00000546296 C20orf173Q96LM9 149 aa12.39□□□□□ -0.43
LTBR-215ENST00000546296 TIMM9Q9Y5J7 89 aa12.39□□□□□ -0.43
LTBR-215ENST00000546296 RFNGQ9Y644 331 aa12.39□□□□□ -0.43
LTBR-215ENST00000546296 TRAV8-2A0A0B4J237 113 aa12.38□□□□□ -0.43
LTBR-215ENST00000546296 H3BTX0 84 aa12.38□□□□□ -0.43
LTBR-215ENST00000546296 DEFB1P60022 68 aa12.38□□□□□ -0.43
LTBR-215ENST00000546296 ACOT6Q3I5F7 207 aaPredicted RBP12.38□□□□□ -0.43
LTBR-215ENST00000546296 SPATA31B1PQ5VZV4 182 aa12.38□□□□□ -0.43
LTBR-215ENST00000546296 LCN15Q6UWW0 184 aa12.38□□□□□ -0.43
LTBR-215ENST00000546296 FOXI2Q6ZQN5 318 aa12.38□□□□□ -0.43
LTBR-215ENST00000546296 TRPT1Q86TN4 253 aaKnown RBP12.38□□□□□ -0.43
LTBR-215ENST00000546296 RNF182Q8N6D2 247 aa12.38□□□□□ -0.43
LTBR-215ENST00000546296 MRPL32Q9BYC8 188 aaKnown RBP12.38□□□□□ -0.43
LTBR-215ENST00000546296 HRH4Q9H3N8 390 aa12.38□□□□□ -0.43
LTBR-215ENST00000546296 FUT9Q9Y231 359 aa12.38□□□□□ -0.43
LTBR-215ENST00000546296 H3BMM0 161 aa12.37□□□□□ -0.43
LTBR-215ENST00000546296 H3BQ15 152 aa12.37□□□□□ -0.43
LTBR-215ENST00000546296 TAAR5O14804 337 aa12.37□□□□□ -0.43
LTBR-215ENST00000546296 CA1P00915 261 aaPredicted RBP12.37□□□□□ -0.43
LTBR-215ENST00000546296 IGLC2P0DOY2 106 aa12.37□□□□□ -0.43
LTBR-215ENST00000546296 CXCL2P19875 107 aa12.37□□□□□ -0.43
LTBR-215ENST00000546296 RHOBP62745 196 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms