RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 SNRPGP15A8MWD9 76 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 FAM90A26D6RGX4 464 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 H3BMM0 161 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 CTDSPLO15194 276 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 GSTZ1O43708 216 aaPredicted RBP6.09□□□□□ -1.43
USP28-215ENST00000545608 TOMM40O96008 361 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 S100A6P06703 90 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 AKAIN1P0CW23 69 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 RD3LP0DJH9 198 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 PSG1P11464 419 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 FAUP35544 74 aaKnown RBP6.09□□□□□ -1.43
USP28-215ENST00000545608 C12orf74Q32Q52 190 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 NMSQ5H8A3 153 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 ETFRF1Q6IPR1 90 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 UQCC3Q6UW78 93 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 OR11H7Q8NGC8 314 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 OR51S1Q8NGJ8 323 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 OR51G1Q8NGK1 321 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 ACY3Q96HD9 319 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 SCRT1Q9BWW7 348 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 XCL2Q9UBD3 114 aa6.09□□□□□ -1.43
USP28-215ENST00000545608 ZNF98A6NK75 572 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 IFNA10P01566 189 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 S100A11P31949 105 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 DEFB1P60022 68 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 FGL1Q08830 312 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 GSG1LQ6UXU4 331 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 SIGLEC15Q6ZMC9 328 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 LYZL2Q7Z4W2 148 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 IL22RA2Q969J5 263 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 LINC00052Q96N35 136 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 TCEAL7Q9BRU2 100 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 RNF126Q9BV68 326 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 RBKSQ9H477 322 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 SAV1Q9H4B6 383 aaPredicted RBP6.08□□□□□ -1.44
USP28-215ENST00000545608 SEPSECSQ9HD40 501 aaKnown RBP6.08□□□□□ -1.44
USP28-215ENST00000545608 NRN1Q9NPD7 142 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 KCNIP3Q9Y2W7 256 aa6.08□□□□□ -1.44
USP28-215ENST00000545608 IGKV1D-37A0A075B6S9 117 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 DEFB131BA0A096LNP1 70 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 ANKRD20A5PA0PJZ0 165 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 F8W036 122 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 MPC2O95563 127 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 IGKV3-20P01619 116 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 S100A8P05109 93 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 IL5P05113 134 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 MED14OSP0DP75 135 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 HLA-DRB4P13762 266 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 CCR6P51684 374 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 AKR1D1P51857 326 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 FXYD7P58549 80 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 NUTF2P61970 127 aaKnown RBP6.07□□□□□ -1.44
USP28-215ENST00000545608 SNRPD3P62318 126 aaKnown RBP6.07□□□□□ -1.44
USP28-215ENST00000545608 SUPT4H1P63272 117 aaKnown RBP6.07□□□□□ -1.44
USP28-215ENST00000545608 RAB32Q13637 225 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 KLF9Q13886 244 aaPredicted RBP6.07□□□□□ -1.44
USP28-215ENST00000545608 GDF5OSQ5U4N7 250 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 LGI3Q8N145 548 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 LINC00469Q8N7U9 141 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 DTD1Q8TEA8 209 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 RNF125Q96EQ8 232 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 PRRT1Q99946 306 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 MGAT4CQ9UBM8 478 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 HSPB7Q9UBY9 170 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 HLA-DRB4X5D2U9 266 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 FRAS1Q86XX4 4008 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 VPS13DQ5THJ4 4388 aa6.07□□□□□ -1.44
USP28-215ENST00000545608 A0A0B4J2A0 478 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 A0A0D9SG52 128 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 B5MCH6 92 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 AKR1C4P17516 323 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 NKX2-1P43699 371 aaPredicted RBP6.06□□□□□ -1.44
USP28-215ENST00000545608 ZNF90Q03938 601 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 GAMTQ14353 236 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 SMCO1Q147U7 214 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 ZNF705AQ6ZN79 300 aaPredicted RBP6.06□□□□□ -1.44
USP28-215ENST00000545608 SVBPQ8N300 66 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 OR11H4Q8NGC9 324 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 COQ8AQ8NI60 647 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 PHYHIPLQ96FC7 376 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 C12orf57Q99622 126 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 PBDC1Q9BVG4 233 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 C1QTNF4Q9BXJ3 329 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 NKX6-2Q9C056 277 aaPredicted RBP6.06□□□□□ -1.44
USP28-215ENST00000545608 C20orf85Q9H1P6 137 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 CACFD1Q9UGQ2 172 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 SHPKQ9UHJ6 478 aa6.06□□□□□ -1.44
USP28-215ENST00000545608 ZFP92A6NM28 416 aa6.05□□□□□ -1.44
USP28-215ENST00000545608 ZNF705FA8MVS1 300 aaPredicted RBP6.05□□□□□ -1.44
USP28-215ENST00000545608 SOCS3O14543 225 aa6.05□□□□□ -1.44
USP28-215ENST00000545608 GATCO43716 136 aaKnown RBP6.05□□□□□ -1.44
USP28-215ENST00000545608 APOC3P02656 99 aa6.05□□□□□ -1.44
USP28-215ENST00000545608 AMBPP02760 352 aa6.05□□□□□ -1.44
USP28-215ENST00000545608 NMBP08949 121 aa6.05□□□□□ -1.44
USP28-215ENST00000545608 ZNF705DP0CH99 300 aaPredicted RBP6.05□□□□□ -1.44
USP28-215ENST00000545608 ZNF705BP0CI00 300 aaPredicted RBP6.05□□□□□ -1.44
USP28-215ENST00000545608 SMIM6P0DI80 62 aa6.05□□□□□ -1.44
USP28-215ENST00000545608 CXCL3P19876 107 aa6.05□□□□□ -1.44
USP28-215ENST00000545608 GPX4P36969 197 aaPredicted RBP6.05□□□□□ -1.44
USP28-215ENST00000545608 EMP1P54849 157 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms