RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 TRAV30A0A087WSZ9 112 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 A0A1B0GXF2 115 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 A0A1W2PS18 150 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 GNG7O60262 68 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 TOX4O94842 621 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 P01737 135 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 MFAP4P55083 255 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 CT83Q5H943 113 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 C1orf194Q5T5A4 169 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 ATP5L2Q7Z4Y8 100 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 NDUFAF3Q9BU61 184 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 PRORYQ9H606 182 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 RNF24Q9Y225 148 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 NCOR2Q9Y618 2525 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 A8MWL6 223 aa14.17□□□□□ -0.14
VIM-209ENST00000544301 ZNF48Q96MX3 618 aaPredicted RBP14.17□□□□□ -0.14
VIM-209ENST00000544301 F8W735 103 aaPredicted RBP14.16□□□□□ -0.14
VIM-209ENST00000544301 MRPS12O15235 138 aaKnown RBP14.16□□□□□ -0.14
VIM-209ENST00000544301 SFTPCP11686 197 aa14.16□□□□□ -0.14
VIM-209ENST00000544301 TMEM11P17152 192 aa14.16□□□□□ -0.14
VIM-209ENST00000544301 TRBV6-1A0A0K0K1D8 114 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 HLA-DRB1P01911 266 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 FCGR2BP31994 310 aaPredicted RBP14.15□□□□□ -0.14
VIM-209ENST00000544301 CAMPP49913 170 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 EFNA4P52798 201 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 TOMM20LQ6UXN7 152 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 SIGLEC15Q6ZMC9 328 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 PRNTQ86SH4 94 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 C18orf32Q8TCD1 76 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 GTSF1Q8WW33 167 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 TMEM190Q8WZ59 177 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 DAZAP1Q96EP5 407 aaKnown RBP14.15□□□□□ -0.14
VIM-209ENST00000544301 FBXL7Q9UJT9 491 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 TBL2Q9Y4P3 447 aaKnown RBP14.15□□□□□ -0.14
VIM-209ENST00000544301 ASH1LQ9NR48 2969 aaKnown RBP14.15□□□□□ -0.14
VIM-209ENST00000544301 IGHV2-70DA0A0C4DH43 119 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 KIR2DL5BA0A0G2JN68 375 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 KIR2DL5BA0A0G2JPC4 375 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 KIR2DL5AQ8N109 375 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 BCL6BQ8N143 479 aaPredicted RBP14.15□□□□□ -0.14
VIM-209ENST00000544301 CIARTQ8N365 385 aaPredicted RBP14.15□□□□□ -0.14
VIM-209ENST00000544301 ITLN2Q8WWU7 325 aaPredicted RBP14.15□□□□□ -0.14
VIM-209ENST00000544301 SSBP4Q9BWG4 385 aaPredicted RBP14.15□□□□□ -0.14
VIM-209ENST00000544301 RNF114Q9Y508 228 aa14.15□□□□□ -0.14
VIM-209ENST00000544301 OR2J3O76001 311 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 EGR2P11161 476 aaPredicted RBP14.14□□□□□ -0.15
VIM-209ENST00000544301 AMTP48728 403 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 Q56UQ5 140 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 TEX43Q6ZNM6 134 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 Q71RC1 249 aaPredicted RBP14.14□□□□□ -0.15
VIM-209ENST00000544301 LYPD1Q8N2G4 141 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 ZNF414Q96IQ9 312 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 NRN1Q9NPD7 142 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 C21orf62Q9NYP8 219 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 NPIPB6E9PJ23 425 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 ZNF324O75467 553 aaPredicted RBP14.14□□□□□ -0.15
VIM-209ENST00000544301 NDUFB8O95169 186 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 PMCHP20382 165 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 GFRA4Q9GZZ7 299 aa14.14□□□□□ -0.15
VIM-209ENST00000544301 CSMD1Q96PZ7 3565 aa14.13□□□□□ -0.15
VIM-209ENST00000544301 IGHV7-81A0A0B4J1V7 117 aa14.13□□□□□ -0.15
VIM-209ENST00000544301 HBBP68871 147 aa14.13□□□□□ -0.15
VIM-209ENST00000544301 TMEM75Q8N9X5 138 aa14.13□□□□□ -0.15
VIM-209ENST00000544301 AJUBAQ96IF1 538 aa14.13□□□□□ -0.15
VIM-209ENST00000544301 PGLYRP4Q96LB8 373 aa14.13□□□□□ -0.15
VIM-209ENST00000544301 ALKBH7Q9BT30 221 aaPredicted RBP14.13□□□□□ -0.15
VIM-209ENST00000544301 UQCRFS1P47985 274 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 UBE2E1P51965 193 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 KLF5Q13887 457 aaPredicted RBP14.12□□□□□ -0.15
VIM-209ENST00000544301 TDRG1Q3Y452 100 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 FAM120AOSQ5T036 256 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 S100A7AQ86SG5 101 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 Q8N9W7 124 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 THYN1Q9P016 225 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 C19orf84I3L1E1 186 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 IGHV3-23P01764 117 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 FAM106CPP0CH98 169 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 COL8A1P27658 744 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 LMO4P61968 165 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 RBPMS2Q6ZRY4 209 aaKnown RBP14.12□□□□□ -0.15
VIM-209ENST00000544301 OR2D3Q8NGH3 330 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 VN1R17PQ8TDU5 208 aa14.12□□□□□ -0.15
VIM-209ENST00000544301 SOX21Q9Y651 276 aaPredicted RBP14.12□□□□□ -0.15
VIM-209ENST00000544301 ZNF785A8K8V0 405 aa14.11□□□□□ -0.15
VIM-209ENST00000544301 KRTDAPP60985 99 aa14.11□□□□□ -0.15
VIM-209ENST00000544301 C16orf54Q6UWD8 224 aa14.11□□□□□ -0.15
VIM-209ENST00000544301 WNK2Q9Y3S1 2297 aa14.11□□□□□ -0.15
VIM-209ENST00000544301 FAM231BA6NCW3 169 aa14.11□□□□□ -0.15
VIM-209ENST00000544301 NIT1Q86X76 327 aa14.11□□□□□ -0.15
VIM-209ENST00000544301 Q8N976 141 aa14.11□□□□□ -0.15
VIM-209ENST00000544301 OR4B1Q8NGF8 309 aa14.11□□□□□ -0.15
VIM-209ENST00000544301 ZC2HC1AQ96GY0 325 aa14.11□□□□□ -0.15
VIM-209ENST00000544301 BPESC1Q9GZL8 116 aa14.11□□□□□ -0.15
VIM-209ENST00000544301 PSG3Q16557 428 aa14.1□□□□□ -0.15
VIM-209ENST00000544301 FAM19A2Q8N3H0 131 aa14.1□□□□□ -0.15
VIM-209ENST00000544301 C1RLQ9NZP8 487 aa14.1□□□□□ -0.15
VIM-209ENST00000544301 PSG8Q9UQ74 426 aa14.1□□□□□ -0.15
VIM-209ENST00000544301 ZFP30Q9Y2G7 519 aa14.1□□□□□ -0.15
VIM-209ENST00000544301 OR2T8A6NH00 312 aa14.09□□□□□ -0.15
VIM-209ENST00000544301 DIRC3C9JPN6 131 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms