RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SHPKQ9UHJ6 478 aa12.34□□□□□ -0.43
CLSTN3-214ENST00000542663 SLC45A2Q9UMX9 530 aa12.34□□□□□ -0.43
CLSTN3-214ENST00000542663 EPM2AB3EWF7 344 aa12.33□□□□□ -0.44
CLSTN3-214ENST00000542663 SMIM18P0DKX4 95 aa12.33□□□□□ -0.44
CLSTN3-214ENST00000542663 ZNF182P17025 639 aaPredicted RBP12.33□□□□□ -0.44
CLSTN3-214ENST00000542663 GATA2P23769 480 aaPredicted RBP12.33□□□□□ -0.44
CLSTN3-214ENST00000542663 OR51S1Q8NGJ8 323 aa12.33□□□□□ -0.44
CLSTN3-214ENST00000542663 OR1B1Q8NGR6 318 aa12.33□□□□□ -0.44
CLSTN3-214ENST00000542663 AP3S1Q92572 193 aa12.33□□□□□ -0.44
CLSTN3-214ENST00000542663 C16orf74Q96GX8 76 aa12.33□□□□□ -0.44
CLSTN3-214ENST00000542663 LINC01587Q99440 93 aa12.33□□□□□ -0.44
CLSTN3-214ENST00000542663 KCNIP3Q9Y2W7 256 aa12.33□□□□□ -0.44
CLSTN3-214ENST00000542663 PRSS46E5RG02 174 aa12.32□□□□□ -0.44
CLSTN3-214ENST00000542663 CFDP00746 253 aaPredicted RBP12.32□□□□□ -0.44
CLSTN3-214ENST00000542663 AKAIN1P0CW23 69 aa12.32□□□□□ -0.44
CLSTN3-214ENST00000542663 TAS2R60P59551 318 aa12.32□□□□□ -0.44
CLSTN3-214ENST00000542663 GGNBP1Q5YKI7 109 aa12.32□□□□□ -0.44
CLSTN3-214ENST00000542663 TMEM256Q8N2U0 113 aa12.32□□□□□ -0.44
CLSTN3-214ENST00000542663 OR1S1Q8NH92 325 aa12.32□□□□□ -0.44
CLSTN3-214ENST00000542663 UPK3BQ9BT76 320 aa12.32□□□□□ -0.44
CLSTN3-214ENST00000542663 NAA50Q9GZZ1 169 aaKnown RBP12.32□□□□□ -0.44
CLSTN3-214ENST00000542663 TIMM8BQ9Y5J9 83 aaPredicted RBP12.32□□□□□ -0.44
CLSTN3-214ENST00000542663 TRAV26-1A0A087WT03 109 aa12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 PITX3O75364 302 aa12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 IAPPP10997 89 aa12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 HTN1P15515 57 aa12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 ORM2P19652 201 aa12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 DLK1P80370 383 aa12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 CTF1Q16619 201 aa12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 ESRGQ1W209 222 aa12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 RNASE8Q8TDE3 154 aaKnown RBP12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 SMIM4Q8WVI0 70 aa12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 GNPNAT1Q96EK6 184 aaPredicted RBP12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 GPR82Q96P67 336 aa12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 PRRT1Q99946 306 aa12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 NOP10Q9NPE3 64 aaKnown RBP12.31□□□□□ -0.44
CLSTN3-214ENST00000542663 A0A1W2PPQ1 181 aa12.3□□□□□ -0.44
CLSTN3-214ENST00000542663 PRB4P10163 310 aaPredicted RBP12.3□□□□□ -0.44
CLSTN3-214ENST00000542663 RAB11AP62491 216 aa12.3□□□□□ -0.44
CLSTN3-214ENST00000542663 MRPS10P82664 201 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-214ENST00000542663 FGL1Q08830 312 aa12.3□□□□□ -0.44
CLSTN3-214ENST00000542663 LINC00612Q8N6U2 182 aa12.3□□□□□ -0.44
CLSTN3-214ENST00000542663 ZNF738Q8NE65 137 aa12.3□□□□□ -0.44
CLSTN3-214ENST00000542663 RXFP4Q8TDU9 374 aa12.3□□□□□ -0.44
CLSTN3-214ENST00000542663 ZNF503Q96F45 646 aa12.3□□□□□ -0.44
CLSTN3-214ENST00000542663 ZNF701M0R085 212 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 INAFM2P0DMQ5 153 aa12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 AKR1C4P17516 323 aa12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 HOXA5P20719 270 aa12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 HIST1H1AQ02539 215 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 OR5I1Q13606 314 aa12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 Q6ZRN7 208 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 TMEM144Q7Z5S9 345 aa12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 CLVS1Q8IUQ0 354 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 BPIFCQ8NFQ6 507 aa12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 OR8A1Q8NGG7 326 aa12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 TMEM263Q8WUH6 116 aaKnown RBP12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 ZNF586Q9NXT0 402 aa12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 MYCBP2O75592 4640 aa12.29□□□□□ -0.44
CLSTN3-214ENST00000542663 A0A0J9YY99 117 aa12.28□□□□□ -0.44
CLSTN3-214ENST00000542663 H3BRN7 92 aa12.28□□□□□ -0.44
CLSTN3-214ENST00000542663 M6PRP20645 277 aa12.28□□□□□ -0.44
CLSTN3-214ENST00000542663 XGP55808 180 aa12.28□□□□□ -0.44
CLSTN3-214ENST00000542663 RHOBP62745 196 aa12.28□□□□□ -0.44
CLSTN3-214ENST00000542663 ZNF493Q6ZR52 646 aa12.28□□□□□ -0.44
CLSTN3-214ENST00000542663 LYPD1Q8N2G4 141 aa12.28□□□□□ -0.44
CLSTN3-214ENST00000542663 TMEM147Q9BVK8 224 aa12.28□□□□□ -0.44
CLSTN3-214ENST00000542663 PAIP2BQ9ULR5 123 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-214ENST00000542663 MRPS16Q9Y3D3 137 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-214ENST00000542663 VPS13BQ7Z7G8 4022 aa12.27□□□□□ -0.44
CLSTN3-214ENST00000542663 ANKRD20A5PA0PJZ0 165 aa12.27□□□□□ -0.45
CLSTN3-214ENST00000542663 CTDSP2O14595 271 aa12.27□□□□□ -0.45
CLSTN3-214ENST00000542663 CXCL3P19876 107 aa12.27□□□□□ -0.45
CLSTN3-214ENST00000542663 FUSP35637 526 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLSTN3-214ENST00000542663 LINC00315P59091 139 aa12.27□□□□□ -0.45
CLSTN3-214ENST00000542663 KIR3DS1Q14943 382 aa12.27□□□□□ -0.45
CLSTN3-214ENST00000542663 CTDSPLO15194 276 aa12.26□□□□□ -0.45
CLSTN3-214ENST00000542663 OR10J6PQ8NGY7 276 aa12.26□□□□□ -0.45
CLSTN3-214ENST00000542663 SHANK2-AS3Q9BTD1 123 aa12.26□□□□□ -0.45
CLSTN3-214ENST00000542663 MRPS26Q9BYN8 205 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-214ENST00000542663 RGS5O15539 181 aa12.25□□□□□ -0.45
CLSTN3-214ENST00000542663 CDKN1BP46527 198 aa12.25□□□□□ -0.45
CLSTN3-214ENST00000542663 SRPXP78539 464 aa12.25□□□□□ -0.45
CLSTN3-214ENST00000542663 PSG3Q16557 428 aa12.25□□□□□ -0.45
CLSTN3-214ENST00000542663 SCP2D1Q9UJQ7 156 aa12.25□□□□□ -0.45
CLSTN3-214ENST00000542663 A0A087X0K7 114 aa12.24□□□□□ -0.45
CLSTN3-214ENST00000542663 H3BNG1 76 aa12.24□□□□□ -0.45
CLSTN3-214ENST00000542663 H7BYZ3 331 aa12.24□□□□□ -0.45
CLSTN3-214ENST00000542663 ANXA3P12429 323 aa12.24□□□□□ -0.45
CLSTN3-214ENST00000542663 AKR1C1Q04828 323 aa12.24□□□□□ -0.45
CLSTN3-214ENST00000542663 Q5VSD8 79 aa12.24□□□□□ -0.45
CLSTN3-214ENST00000542663 SCGB3A2Q96PL1 93 aa12.24□□□□□ -0.45
CLSTN3-214ENST00000542663 PPP1R14DQ9NXH3 145 aa12.24□□□□□ -0.45
CLSTN3-214ENST00000542663 DUXBA0A1W2PPF3 345 aa12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 GAGE12BA1L429 117 aa12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 WRBO00258 174 aa12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 GAGE7O76087 117 aa12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 GAGE12FP0CL80 117 aa12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 GAGE12GP0CL81 117 aa12.23□□□□□ -0.45
CLSTN3-214ENST00000542663 GAGE12IP0CL82 117 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms