RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 LEMD1Q68G75 181 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 SIGLEC15Q6ZMC9 328 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 SPAG8Q99932 426 aaPredicted RBP12.88□□□□□ -0.35
LIG1-204ENST00000542460 SH3BGRL3Q9H299 93 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 ZNF256Q9Y2P7 627 aaPredicted RBP12.88□□□□□ -0.35
LIG1-204ENST00000542460 M6PRP20645 277 aa12.87□□□□□ -0.35
LIG1-204ENST00000542460 C4BPBP20851 252 aa12.87□□□□□ -0.35
LIG1-204ENST00000542460 PAFAH1B2P68402 229 aa12.87□□□□□ -0.35
LIG1-204ENST00000542460 ACOT6Q3I5F7 207 aaPredicted RBP12.87□□□□□ -0.35
LIG1-204ENST00000542460 FAM78BQ5VT40 261 aa12.87□□□□□ -0.35
LIG1-204ENST00000542460 SLC25A32Q9H2D1 315 aa12.87□□□□□ -0.35
LIG1-204ENST00000542460 MBP02144 154 aa12.86□□□□□ -0.35
LIG1-204ENST00000542460 GP9P14770 177 aa12.86□□□□□ -0.35
LIG1-204ENST00000542460 SEPSECSQ9HD40 501 aaKnown RBP12.86□□□□□ -0.35
LIG1-204ENST00000542460 IGKV3-7A0A075B6H7 116 aa12.85□□□□□ -0.35
LIG1-204ENST00000542460 SPP1P10451 314 aa12.85□□□□□ -0.35
LIG1-204ENST00000542460 TPT1P13693 172 aaKnown RBP12.85□□□□□ -0.35
LIG1-204ENST00000542460 RPL7P18124 248 aaKnown RBP12.85□□□□□ -0.35
LIG1-204ENST00000542460 GALR1P47211 349 aa12.85□□□□□ -0.35
LIG1-204ENST00000542460 MORN5Q5VZ52 161 aa12.85□□□□□ -0.35
LIG1-204ENST00000542460 BAP18Q8IXM2 172 aa12.85□□□□□ -0.35
LIG1-204ENST00000542460 STOML3Q8TAV4 291 aa12.85□□□□□ -0.35
LIG1-204ENST00000542460 MRPL32Q9BYC8 188 aaKnown RBP12.85□□□□□ -0.35
LIG1-204ENST00000542460 MS4A6AQ9H2W1 248 aa12.85□□□□□ -0.35
LIG1-204ENST00000542460 OR4C46A6NHA9 309 aa12.84□□□□□ -0.35
LIG1-204ENST00000542460 DNASE2O00115 360 aaPredicted RBP12.84□□□□□ -0.35
LIG1-204ENST00000542460 RHOBP62745 196 aa12.84□□□□□ -0.35
LIG1-204ENST00000542460 BPIFA4PQ86YQ2 179 aa12.84□□□□□ -0.35
LIG1-204ENST00000542460 GBGT1Q8N5D6 347 aa12.84□□□□□ -0.35
LIG1-204ENST00000542460 STXBP6Q8NFX7 210 aa12.84□□□□□ -0.35
LIG1-204ENST00000542460 OR10G4Q8NGN3 311 aa12.84□□□□□ -0.35
LIG1-204ENST00000542460 OR10G9Q8NGN4 311 aa12.84□□□□□ -0.35
LIG1-204ENST00000542460 OR10G7Q8NGN6 311 aa12.84□□□□□ -0.35
LIG1-204ENST00000542460 FUT9Q9Y231 359 aa12.84□□□□□ -0.35
LIG1-204ENST00000542460 TRAV2A0A0B4J234 112 aa12.83□□□□□ -0.35
LIG1-204ENST00000542460 TRAV5A0A0B4J249 113 aa12.83□□□□□ -0.35
LIG1-204ENST00000542460 SEC11BP0C7V7 166 aa12.83□□□□□ -0.35
LIG1-204ENST00000542460 RAB2AP61019 212 aa12.83□□□□□ -0.35
LIG1-204ENST00000542460 SLC51BQ86UW2 128 aa12.83□□□□□ -0.35
LIG1-204ENST00000542460 NRN1Q9NPD7 142 aa12.83□□□□□ -0.35
LIG1-204ENST00000542460 SMAD5-AS1Q9Y6J3 95 aa12.83□□□□□ -0.35
LIG1-204ENST00000542460 A0A1W2PPV4 95 aa12.83□□□□□ -0.36
LIG1-204ENST00000542460 TFPI2P48307 235 aa12.83□□□□□ -0.36
LIG1-204ENST00000542460 DEFA6Q01524 100 aa12.83□□□□□ -0.36
LIG1-204ENST00000542460 TMEM41BQ5BJD5 291 aa12.83□□□□□ -0.36
LIG1-204ENST00000542460 SPATA31B1PQ5VZV4 182 aa12.83□□□□□ -0.36
LIG1-204ENST00000542460 MIR17HGQ75NE6 70 aa12.83□□□□□ -0.36
LIG1-204ENST00000542460 GTSCR1Q86UQ5 136 aa12.83□□□□□ -0.36
LIG1-204ENST00000542460 WFDC3Q8IUB2 231 aa12.83□□□□□ -0.36
LIG1-204ENST00000542460 BOLA1Q9Y3E2 137 aa12.83□□□□□ -0.36
LIG1-204ENST00000542460 NOTCH1P46531 2555 aa12.82□□□□□ -0.36
LIG1-204ENST00000542460 ATF4P18848 351 aaPredicted RBP12.82□□□□□ -0.36
LIG1-204ENST00000542460 AKR1C8PQ5T2L2 129 aa12.82□□□□□ -0.36
LIG1-204ENST00000542460 DCANP1Q8TF63 244 aa12.82□□□□□ -0.36
LIG1-204ENST00000542460 PRR25Q96S07 402 aa12.82□□□□□ -0.36
LIG1-204ENST00000542460 MRPS12O15235 138 aaKnown RBP12.81□□□□□ -0.36
LIG1-204ENST00000542460 MEOX2P50222 304 aa12.81□□□□□ -0.36
LIG1-204ENST00000542460 TAS2R45P59539 299 aa12.81□□□□□ -0.36
LIG1-204ENST00000542460 EIF5AL1Q6IS14 154 aaKnown RBP12.81□□□□□ -0.36
LIG1-204ENST00000542460 FAM122CQ6P4D5 195 aa12.81□□□□□ -0.36
LIG1-204ENST00000542460 RPP25LQ8N5L8 163 aaKnown RBP12.81□□□□□ -0.36
LIG1-204ENST00000542460 RPRMQ9NS64 109 aa12.81□□□□□ -0.36
LIG1-204ENST00000542460 TMEM14CQ9P0S9 112 aa12.81□□□□□ -0.36
LIG1-204ENST00000542460 K7EQG2 157 aa12.8□□□□□ -0.36
LIG1-204ENST00000542460 IFITM2Q01629 132 aa12.8□□□□□ -0.36
LIG1-204ENST00000542460 SAMD13Q5VXD3 122 aa12.8□□□□□ -0.36
LIG1-204ENST00000542460 FAM167A-AS1Q96KT0 104 aa12.8□□□□□ -0.36
LIG1-204ENST00000542460 SLC25A2Q9BXI2 301 aa12.8□□□□□ -0.36
LIG1-204ENST00000542460 A0A087X0K7 114 aa12.79□□□□□ -0.36
LIG1-204ENST00000542460 UMAD1C9J7I0 102 aa12.79□□□□□ -0.36
LIG1-204ENST00000542460 CD7P09564 240 aa12.79□□□□□ -0.36
LIG1-204ENST00000542460 CDC34P49427 236 aaPredicted RBP12.79□□□□□ -0.36
LIG1-204ENST00000542460 CMC4P56277 68 aaPredicted RBP12.79□□□□□ -0.36
LIG1-204ENST00000542460 CD81P60033 236 aa12.79□□□□□ -0.36
LIG1-204ENST00000542460 TMED6Q8WW62 240 aa12.79□□□□□ -0.36
LIG1-204ENST00000542460 C17orf77Q96MU5 243 aa12.79□□□□□ -0.36
LIG1-204ENST00000542460 ACTR3CQ9C0K3 210 aaPredicted RBP12.79□□□□□ -0.36
LIG1-204ENST00000542460 HRH4Q9H3N8 390 aa12.79□□□□□ -0.36
LIG1-204ENST00000542460 AURKAIP1Q9NWT8 199 aaPredicted RBP12.79□□□□□ -0.36
LIG1-204ENST00000542460 RGS13O14921 159 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 ATP6V1G1O75348 118 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 IGLC2P0DOY2 106 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 KHDC3LQ587J8 217 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 RAB24Q969Q5 203 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 FAM110AQ9BQ89 295 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 OR51M1Q9H341 326 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 OR7C2O60412 319 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 PRB2P02812 416 aaPredicted RBP12.78□□□□□ -0.36
LIG1-204ENST00000542460 HIST1H1EP10412 219 aaKnown RBP12.78□□□□□ -0.36
LIG1-204ENST00000542460 ID1P41134 155 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 GUK1Q16774 197 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 Q8N1Y9 231 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 FAM210AQ96ND0 272 aa12.78□□□□□ -0.36
LIG1-204ENST00000542460 DNAH3Q8TD57 4116 aa12.77□□□□□ -0.37
LIG1-204ENST00000542460 SORL1Q92673 2214 aa12.77□□□□□ -0.37
LIG1-204ENST00000542460 H3BQ15 152 aa12.77□□□□□ -0.37
LIG1-204ENST00000542460 ISLRO14498 428 aa12.77□□□□□ -0.37
LIG1-204ENST00000542460 SOCS3O14543 225 aa12.77□□□□□ -0.37
LIG1-204ENST00000542460 PYYP10082 97 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms