RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 HIST1H1BP16401 226 aaKnown RBP11.32□□□□□ -0.6
CLIP1-216ENST00000541410 YPEL3P61236 119 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-216ENST00000541410 RPL15P61313 204 aaKnown RBP11.32□□□□□ -0.6
CLIP1-216ENST00000541410 MEGF9Q9H1U4 602 aa11.32□□□□□ -0.6
CLIP1-216ENST00000541410 A0A096LNT2 108 aa11.31□□□□□ -0.6
CLIP1-216ENST00000541410 DSCR9P59020 149 aa11.31□□□□□ -0.6
CLIP1-216ENST00000541410 UBE2G1P62253 170 aa11.31□□□□□ -0.6
CLIP1-216ENST00000541410 IGHV3OR16-13A0A075B7E8 117 aa11.31□□□□□ -0.6
CLIP1-216ENST00000541410 IGHV3-74A0A0B4J1X5 117 aa11.31□□□□□ -0.6
CLIP1-216ENST00000541410 GCGP01275 180 aa11.31□□□□□ -0.6
CLIP1-216ENST00000541410 HIST1H1EP10412 219 aaKnown RBP11.31□□□□□ -0.6
CLIP1-216ENST00000541410 SLC25A16P16260 332 aa11.31□□□□□ -0.6
CLIP1-216ENST00000541410 IBA57Q5T440 356 aaKnown RBP11.31□□□□□ -0.6
CLIP1-216ENST00000541410 BPIFA4PQ86YQ2 179 aa11.31□□□□□ -0.6
CLIP1-216ENST00000541410 CCDC140Q96MF4 163 aa11.31□□□□□ -0.6
CLIP1-216ENST00000541410 LY96Q9Y6Y9 160 aa11.31□□□□□ -0.6
CLIP1-216ENST00000541410 IGHV3-66A0A0C4DH42 116 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 LCNL1Q6ZST4 164 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 OR8I2Q8N0Y5 310 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 ZNF502Q8TBZ5 544 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 IL36BQ9NZH7 164 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 CCDC168Q8NDH2 2452 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 TRAV41A0A0B4J266 112 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 TCRAP04437 139 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 PAX1P15863 534 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 FOXL1Q12952 345 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 LINC01356Q8N9X3 169 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 OR4F17Q8NGA8 305 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 TMEM68Q96MH6 324 aa11.3□□□□□ -0.6
CLIP1-216ENST00000541410 CREBBPQ92793 2442 aa11.29□□□□□ -0.6
CLIP1-216ENST00000541410 IGHV3-49A0A0A0MS15 119 aa11.29□□□□□ -0.6
CLIP1-216ENST00000541410 TRBV9A0A0B4J1U6 114 aa11.29□□□□□ -0.6
CLIP1-216ENST00000541410 M0R3E3 92 aa11.29□□□□□ -0.6
CLIP1-216ENST00000541410 ZNF207O43670 478 aaKnown RBP11.29□□□□□ -0.6
CLIP1-216ENST00000541410 IGLC2P0DOY2 106 aa11.29□□□□□ -0.6
CLIP1-216ENST00000541410 IGFL4Q6B9Z1 124 aa11.29□□□□□ -0.6
CLIP1-216ENST00000541410 GOLT1AQ6ZVE7 132 aa11.29□□□□□ -0.6
CLIP1-216ENST00000541410 C5orf17Q8NAS9 161 aa11.29□□□□□ -0.6
CLIP1-216ENST00000541410 ZNF414Q96IQ9 312 aa11.29□□□□□ -0.6
CLIP1-216ENST00000541410 ZNF48Q96MX3 618 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-216ENST00000541410 TMEM14CQ9P0S9 112 aa11.29□□□□□ -0.6
CLIP1-216ENST00000541410 TRBV19A0A075B6N1 114 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 TRAV20A0A0B4J274 112 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 ZNF705GA8MUZ8 300 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-216ENST00000541410 TAS2R60P59551 318 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 RPEL1Q2QD12 228 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 LINC00518Q8N0U6 118 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 ATG101Q9BSB4 218 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 MXRA5Q9NR99 2828 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 IFITM10A6NMD0 228 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 MRPS12O15235 138 aaKnown RBP11.28□□□□□ -0.6
CLIP1-216ENST00000541410 CBLN1P23435 193 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 TMEM183BQ1AE95 376 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 DEFB112Q30KQ8 113 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 TMEM95Q3KNT9 176 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 Q5PR19 223 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 CMTM2Q8TAZ6 248 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 IMMP2LQ96T52 175 aa11.28□□□□□ -0.6
CLIP1-216ENST00000541410 A6NDX4 124 aa11.27□□□□□ -0.6
CLIP1-216ENST00000541410 TOMM20LQ6UXN7 152 aa11.27□□□□□ -0.6
CLIP1-216ENST00000541410 LINC00322Q6ZN03 302 aaPredicted RBP11.27□□□□□ -0.6
CLIP1-216ENST00000541410 VN1R17PQ8TDU5 208 aa11.27□□□□□ -0.6
CLIP1-216ENST00000541410 TRAPPC1Q9Y5R8 145 aa11.27□□□□□ -0.6
CLIP1-216ENST00000541410 IGHV4-59P01825 116 aa11.27□□□□□ -0.61
CLIP1-216ENST00000541410 TRGV3P03979 118 aa11.27□□□□□ -0.61
CLIP1-216ENST00000541410 HOXA5P20719 270 aa11.27□□□□□ -0.61
CLIP1-216ENST00000541410 DEFB113Q30KQ7 82 aa11.27□□□□□ -0.61
CLIP1-216ENST00000541410 ACTL10Q5JWF8 245 aa11.27□□□□□ -0.61
CLIP1-216ENST00000541410 SIGLEC15Q6ZMC9 328 aa11.27□□□□□ -0.61
CLIP1-216ENST00000541410 PRNTQ86SH4 94 aa11.27□□□□□ -0.61
CLIP1-216ENST00000541410 GPR61Q9BZJ8 451 aa11.27□□□□□ -0.61
CLIP1-216ENST00000541410 OTORQ9NRC9 128 aa11.27□□□□□ -0.61
CLIP1-216ENST00000541410 TYMSP04818 313 aa11.26□□□□□ -0.61
CLIP1-216ENST00000541410 PRR31Q5SQ13 230 aa11.26□□□□□ -0.61
CLIP1-216ENST00000541410 NUDT10Q8NFP7 164 aa11.26□□□□□ -0.61
CLIP1-216ENST00000541410 NUDT11Q96G61 164 aa11.26□□□□□ -0.61
CLIP1-216ENST00000541410 C12orf57Q99622 126 aa11.26□□□□□ -0.61
CLIP1-216ENST00000541410 OSTCQ9NRP0 149 aa11.26□□□□□ -0.61
CLIP1-216ENST00000541410 RABAC1Q9UI14 185 aa11.26□□□□□ -0.61
CLIP1-216ENST00000541410 SONP18583 2426 aaKnown RBP11.26□□□□□ -0.61
CLIP1-216ENST00000541410 PCP4L1A6NKN8 68 aa11.26□□□□□ -0.61
CLIP1-216ENST00000541410 IGHV3-11P01762 117 aa11.26□□□□□ -0.61
CLIP1-216ENST00000541410 IER3P46695 156 aa11.26□□□□□ -0.61
CLIP1-216ENST00000541410 CIARTQ8N365 385 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-216ENST00000541410 Q96MF0 132 aa11.26□□□□□ -0.61
CLIP1-216ENST00000541410 A0A1B0GUS0 222 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 TRBV12-3P01733 135 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 APOHP02749 345 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-216ENST00000541410 TPPP2P59282 170 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 ATP5G2Q06055 141 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 EEF1AKMT3Q96AZ1 226 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 GPR82Q96P67 336 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 KLK15Q9H2R5 256 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 TGOLN2O43493 480 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 HLA-DMBP28068 263 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 MRPL54Q6P161 138 aaKnown RBP11.25□□□□□ -0.61
CLIP1-216ENST00000541410 TXN2Q99757 166 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 ZFAND3Q9H8U3 227 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 KLF12Q9Y4X4 402 aa11.25□□□□□ -0.61
CLIP1-216ENST00000541410 HELZ2Q9BYK8 2649 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms