RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 NBEAP1P0C6P0 100 aa13.6□□□□□ -0.23
CLIP1-215ENST00000541108 SFTA3P0C7M3 94 aa13.6□□□□□ -0.23
CLIP1-215ENST00000541108 HIST1H1EP10412 219 aaKnown RBP13.6□□□□□ -0.23
CLIP1-215ENST00000541108 RPL7P18124 248 aaKnown RBP13.6□□□□□ -0.23
CLIP1-215ENST00000541108 CD81P60033 236 aa13.6□□□□□ -0.23
CLIP1-215ENST00000541108 UBE2G2P60604 165 aa13.6□□□□□ -0.23
CLIP1-215ENST00000541108 C20orf24Q9BUV8 137 aa13.6□□□□□ -0.23
CLIP1-215ENST00000541108 SEC11CQ9BY50 192 aa13.6□□□□□ -0.23
CLIP1-215ENST00000541108 IGHV3OR16-8A0A075B7F1 116 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 A0A1B0GUS0 222 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 TMEM250H0YL14 139 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 K7EMT4 169 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 RPEL1Q2QD12 228 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 CST9LP1Q5W188 147 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 UNQ9165/PRO28630Q6UXU0 137 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 OR4F17Q8NGA8 305 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 GPR82Q96P67 336 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 OR4F4Q96R69 305 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 MRPS12O15235 138 aaKnown RBP13.59□□□□□ -0.23
CLIP1-215ENST00000541108 PDE6DO43924 150 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 PROK1P58294 105 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 C10orf91Q5T1B1 145 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 OR8I2Q8N0Y5 310 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 LINC00052Q96N35 136 aa13.59□□□□□ -0.23
CLIP1-215ENST00000541108 YTHDF2Q9Y5A9 579 aaKnown RBP13.59□□□□□ -0.23
CLIP1-215ENST00000541108 F8W036 122 aa13.58□□□□□ -0.24
CLIP1-215ENST00000541108 IGLC2P0DOY2 106 aa13.58□□□□□ -0.24
CLIP1-215ENST00000541108 DAZ1Q9NQZ3 744 aaKnown RBP13.58□□□□□ -0.24
CLIP1-215ENST00000541108 A0A1W2PS18 150 aa13.57□□□□□ -0.24
CLIP1-215ENST00000541108 ZNF320A2RRD8 509 aa13.57□□□□□ -0.24
CLIP1-215ENST00000541108 LGALS9O00182 355 aa13.57□□□□□ -0.24
CLIP1-215ENST00000541108 CCDC28AQ8IWP9 274 aa13.57□□□□□ -0.24
CLIP1-215ENST00000541108 IGHV4OR15-8A0A075B7B6 117 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 A0A087WW49 117 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 F6UZH7 168 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 HAX1O00165 279 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 ATP5G3P48201 142 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 PDE6HQ13956 83 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 SOHLH1Q5JUK2 328 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 CYB561D1Q8N8Q1 229 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 ZNF586Q9NXT0 402 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 UFC1Q9Y3C8 167 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 TSSC4Q9Y5U2 329 aaPredicted RBP13.56□□□□□ -0.24
CLIP1-215ENST00000541108 H3BQ15 152 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 ADCYAP1P18509 176 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 KHDC1LQ5JSQ8 128 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 REC114Q7Z4M0 266 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 LYPD1Q8N2G4 141 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 BLNKQ8WV28 456 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 TCEAL7Q9BRU2 100 aa13.56□□□□□ -0.24
CLIP1-215ENST00000541108 CARHSP1Q9Y2V2 147 aaKnown RBP13.56□□□□□ -0.24
CLIP1-215ENST00000541108 TRBV19A0A075B6N1 114 aa13.55□□□□□ -0.24
CLIP1-215ENST00000541108 LINC01619G3V211 115 aa13.55□□□□□ -0.24
CLIP1-215ENST00000541108 CD28P10747 220 aa13.55□□□□□ -0.24
CLIP1-215ENST00000541108 HOXD3P31249 432 aaPredicted RBP13.55□□□□□ -0.24
CLIP1-215ENST00000541108 MYCNOSP40205 109 aa13.55□□□□□ -0.24
CLIP1-215ENST00000541108 SUMO1P63165 101 aaKnown RBP13.55□□□□□ -0.24
CLIP1-215ENST00000541108 KLHL30-AS1Q8NEE0 82 aa13.55□□□□□ -0.24
CLIP1-215ENST00000541108 GRAMD2BQ96HH9 432 aa13.55□□□□□ -0.24
CLIP1-215ENST00000541108 A8MWP6 167 aa13.54□□□□□ -0.24
CLIP1-215ENST00000541108 GGTLC3B5MD39 225 aa13.54□□□□□ -0.24
CLIP1-215ENST00000541108 ZNF207O43670 478 aaKnown RBP13.54□□□□□ -0.24
CLIP1-215ENST00000541108 APOHP02749 345 aaPredicted RBP13.54□□□□□ -0.24
CLIP1-215ENST00000541108 GALR1P47211 349 aa13.54□□□□□ -0.24
CLIP1-215ENST00000541108 RANP62826 216 aaKnown RBP13.54□□□□□ -0.24
CLIP1-215ENST00000541108 KLF5Q13887 457 aaPredicted RBP13.54□□□□□ -0.24
CLIP1-215ENST00000541108 C16orf54Q6UWD8 224 aa13.54□□□□□ -0.24
CLIP1-215ENST00000541108 C18orf65Q6ZTR6 163 aa13.54□□□□□ -0.24
CLIP1-215ENST00000541108 C1QL4Q86Z23 238 aa13.54□□□□□ -0.24
CLIP1-215ENST00000541108 OR11H1Q8NG94 326 aa13.54□□□□□ -0.24
CLIP1-215ENST00000541108 OR1N2Q8NGR9 330 aa13.54□□□□□ -0.24
CLIP1-215ENST00000541108 IGHV7-4-1A0A0J9YVY3 117 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 MEOX2P50222 304 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 FAM90A2PQ658T7 463 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 DPF1Q92782 380 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 CITED2Q99967 270 aaPredicted RBP13.53□□□□□ -0.24
CLIP1-215ENST00000541108 A0A087X0K7 114 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 ZNF253O75346 499 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 APOC3P02656 99 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 FAM74A3Q4VXF1 159 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 TM4SF20Q53R12 229 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 C11orf52Q96A22 123 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 ELOVL1Q9BW60 279 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 SMPXQ9UHP9 88 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 SMAD5-AS1Q9Y6J3 95 aa13.53□□□□□ -0.24
CLIP1-215ENST00000541108 NDUFB4O95168 129 aa13.52□□□□□ -0.25
CLIP1-215ENST00000541108 SNRPCP09234 159 aaKnown RBP13.52□□□□□ -0.25
CLIP1-215ENST00000541108 ATF4P18848 351 aaPredicted RBP13.52□□□□□ -0.25
CLIP1-215ENST00000541108 BMI1P35226 326 aa13.52□□□□□ -0.25
CLIP1-215ENST00000541108 CEBPGP53567 150 aa13.52□□□□□ -0.25
CLIP1-215ENST00000541108 SRSF2Q01130 221 aaKnown RBP13.52□□□□□ -0.25
CLIP1-215ENST00000541108 FOXL1Q12952 345 aa13.52□□□□□ -0.25
CLIP1-215ENST00000541108 GLMPQ8WWB7 406 aa13.52□□□□□ -0.25
CLIP1-215ENST00000541108 C2CD3Q4AC94 2353 aa13.52□□□□□ -0.25
CLIP1-215ENST00000541108 IGHV3OR16-13A0A075B7E8 117 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 IGHV3-74A0A0B4J1X5 117 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 PGPA6NDG6 321 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 SYNJ2BPP57105 145 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 PSG9Q00887 426 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 DEFB136Q30KP8 78 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms