RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 MBP02144 154 aa9.39□□□□□ -0.91
CLSTN3-208ENST00000538933 SEC11BP0C7V7 166 aa9.39□□□□□ -0.91
CLSTN3-208ENST00000538933 SYNJ2BPP57105 145 aa9.39□□□□□ -0.91
CLSTN3-208ENST00000538933 TOMM20LQ6UXN7 152 aa9.39□□□□□ -0.91
CLSTN3-208ENST00000538933 GPHB5Q86YW7 130 aa9.39□□□□□ -0.91
CLSTN3-208ENST00000538933 TMED6Q8WW62 240 aa9.39□□□□□ -0.91
CLSTN3-208ENST00000538933 FAM110AQ9BQ89 295 aa9.39□□□□□ -0.91
CLSTN3-208ENST00000538933 ARV1Q9H2C2 271 aa9.39□□□□□ -0.91
CLSTN3-208ENST00000538933 PEMTQ9UBM1 199 aa9.39□□□□□ -0.91
CLSTN3-208ENST00000538933 HIGD1AQ9Y241 93 aa9.39□□□□□ -0.91
CLSTN3-208ENST00000538933 UFC1Q9Y3C8 167 aa9.39□□□□□ -0.91
CLSTN3-208ENST00000538933 A0A1W2PPV4 95 aa9.38□□□□□ -0.91
CLSTN3-208ENST00000538933 ZNF207O43670 478 aaKnown RBP9.38□□□□□ -0.91
CLSTN3-208ENST00000538933 SPP1P10451 314 aa9.38□□□□□ -0.91
CLSTN3-208ENST00000538933 BMI1P35226 326 aa9.38□□□□□ -0.91
CLSTN3-208ENST00000538933 PRR20EP86478 221 aa9.38□□□□□ -0.91
CLSTN3-208ENST00000538933 PRR20CP86479 221 aa9.38□□□□□ -0.91
CLSTN3-208ENST00000538933 PRR20DP86480 221 aa9.38□□□□□ -0.91
CLSTN3-208ENST00000538933 PRR20BP86481 221 aa9.38□□□□□ -0.91
CLSTN3-208ENST00000538933 PRR20AP86496 221 aa9.38□□□□□ -0.91
CLSTN3-208ENST00000538933 C10orf113Q5VZT2 155 aa9.38□□□□□ -0.91
CLSTN3-208ENST00000538933 TMEM190Q8WZ59 177 aa9.38□□□□□ -0.91
CLSTN3-208ENST00000538933 ELOA3CA0A087WX78 387 aaPredicted RBP9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 M6PRP20645 277 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 NPPCP23582 126 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 TMEM41BQ5BJD5 291 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 FAM122CQ6P4D5 195 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 ALKAL2Q6UX46 152 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 OR10G4Q8NGN3 311 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 OR10G9Q8NGN4 311 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 OR10G7Q8NGN6 311 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 PHYHIPLQ96FC7 376 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 RNF2Q99496 336 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 DNAJC4Q9NNZ3 241 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 DAZ1Q9NQZ3 744 aaKnown RBP9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 RNF24Q9Y225 148 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 RFNGQ9Y644 331 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 PKD1P98161 4303 aa9.37□□□□□ -0.91
CLSTN3-208ENST00000538933 A0A1W2PS18 150 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 UMAD1C9J7I0 102 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 IFNA7P01567 189 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 PLP1P60201 277 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 RAB2AP61019 212 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 RHOBP62745 196 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 KLF5Q13887 457 aaPredicted RBP9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 USF2Q15853 346 aaPredicted RBP9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 FAM78BQ5VT40 261 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 UNQ9165/PRO28630Q6UXU0 137 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 GRAMD2BQ96HH9 432 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 ELOVL1Q9BW60 279 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 ACTR3CQ9C0K3 210 aaPredicted RBP9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 TMEM231Q9H6L2 316 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 ZFAND3Q9H8U3 227 aa9.36□□□□□ -0.91
CLSTN3-208ENST00000538933 LGALS9O00182 355 aa9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 CDC34P49427 236 aaPredicted RBP9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 RAB5CP51148 216 aa9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 TAS2R45P59539 299 aa9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 HERC1Q15751 4861 aa9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 GCSAMLQ5JQS6 135 aa9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 LINC00305Q7Z4B0 112 aa9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 OR9G4Q8NGQ1 327 aa9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 DYNLRB2Q8TF09 96 aa9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 UHRF2Q96PU4 802 aa9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 MRPL32Q9BYC8 188 aaKnown RBP9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 SLC25A22Q9H936 323 aa9.35□□□□□ -0.91
CLSTN3-208ENST00000538933 IGHV3OR16-13A0A075B7E8 117 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 IGHV3-49A0A0A0MS15 119 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 IGHV3-74A0A0B4J1X5 117 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 K7EMT4 169 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 TM4SF20Q53R12 229 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 TEX261Q6UWH6 196 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 FAM213BQ8TBF2 198 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 RNF141Q8WVD5 230 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 MARC2Q969Z3 335 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 SLC25A39Q9BZJ4 359 aaPredicted RBP9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 VSIRQ9H7M9 311 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 UBQLN2Q9UHD9 624 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 FUT9Q9Y231 359 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 DNAH11Q96DT5 4516 aa9.34□□□□□ -0.91
CLSTN3-208ENST00000538933 IGHV3-66A0A0C4DH42 116 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 IGHV7-4-1A0A0J9YVY3 117 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 A8MWP6 167 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 TEX46H3BTG2 121 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 SULT1A2P50226 295 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 KHDC3LQ587J8 217 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 FAM74A1Q5RGS3 127 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 DPPA3Q6W0C5 159 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 IL34Q6ZMJ4 242 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 IQCF2Q8IXL9 164 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 OR8I2Q8N0Y5 310 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 TMEM37Q8WXS4 190 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 TUBA4BQ9H853 241 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 RPRMQ9NS64 109 aa9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 MRPL27Q9P0M9 148 aaKnown RBP9.33□□□□□ -0.92
CLSTN3-208ENST00000538933 CTXND1A0A1B0GTU2 59 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 C2orf70A6NJV1 201 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 ZNF98A6NK75 572 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 ZNF705EA8MWA4 302 aaPredicted RBP9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 H3BRN7 92 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 OR7C2O60412 319 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms