RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ZNF729A6NN14 1252 aaPredicted RBP2.06□□□□□ -2.08
CD44-235ENST00000532339 H3BQF6 201 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 CHP2O43745 196 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 GGCTO75223 188 aaKnown RBP2.06□□□□□ -2.08
CD44-235ENST00000532339 DHRS3O75911 302 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 NDUFA3O95167 84 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 IGHV3-7P01780 117 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 KRTAP2-3P0C7H8 128 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 HLA-GP17693 338 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 NTF3P20783 257 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 PYCR1P32322 319 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 ANP32AP39687 249 aaKnown RBP2.06□□□□□ -2.08
CD44-235ENST00000532339 GNG10P50151 68 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 EMP1P54849 157 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 SP6Q3SY56 376 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 SSX6Q7RTT6 188 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 ORMDL3Q8N138 153 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 CCNYL1Q8N7R7 359 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.06□□□□□ -2.08
CD44-235ENST00000532339 GTF2H4Q92759 462 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 LEAP2Q969E1 77 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 CCDC124Q96CT7 223 aaKnown RBP2.06□□□□□ -2.08
CD44-235ENST00000532339 METTL26Q96S19 204 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 KRTAP2-4Q9BYR9 128 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 CHST6Q9GZX3 395 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 OR2S2Q9NQN1 319 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 PRO0628Q9UI54 55 aa2.06□□□□□ -2.08
CD44-235ENST00000532339 ODAMA1E959 279 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 H7C1C5 153 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 TCAPO15273 167 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 FADS2O95864 444 aaKnown RBP2.05□□□□□ -2.08
CD44-235ENST00000532339 HLA-AP01891 365 aaKnown RBP2.05□□□□□ -2.08
CD44-235ENST00000532339 MAS1P04201 325 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 IL4P05112 153 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 NQO2P16083 231 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 TGFBR1P36897 503 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 OR1E2P47887 323 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 LGALS7P47929 136 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 DSTNP60981 165 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 LCN6P62502 163 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 DEFA5Q01523 94 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 SPA17Q15506 151 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 MAPRE2Q15555 327 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 CEACAM21Q3KPI0 293 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 OR10K2Q6IF99 312 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 AHSA2Q719I0 299 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 KRTCAP2Q8N6L1 136 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 ST20-AS1Q8NBB2 130 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 DRAXINQ8NBI3 349 aaPredicted RBP2.05□□□□□ -2.08
CD44-235ENST00000532339 OR5A2Q8NGI9 324 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 OR52N1Q8NH53 320 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 REEP6Q96HR9 211 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 GPR82Q96P67 336 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 MRPL57Q9BQC6 102 aaKnown RBP2.05□□□□□ -2.08
CD44-235ENST00000532339 ZNF426Q9BUY5 554 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 NXF2Q9GZY0 626 aaKnown RBP2.05□□□□□ -2.08
CD44-235ENST00000532339 LINC00574Q9H8X3 128 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 FAM206AQ9NX38 181 aa2.05□□□□□ -2.08
CD44-235ENST00000532339 ZNF230Q9UIE0 474 aaPredicted RBP2.05□□□□□ -2.08
CD44-235ENST00000532339 SMIM9A6NGZ8 99 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 FAM159BA6NKW6 160 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 FAM223BA6NKX1 122 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 SMIM23A6NLE4 172 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 A8MUU9 505 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 A8MWL6 223 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 PPP5D1E7EU14 171 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 MFNGO00587 321 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 PSCAO43653 123 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 OR7C2O60412 319 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 ADAP1O75689 374 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 SCO1O75880 301 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 CPSF4O95639 269 aaKnown RBP2.04□□□□□ -2.08
CD44-235ENST00000532339 RLN2P04090 185 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 SLC2A1P11166 492 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 MAGEA2P43356 314 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 SLC18A1P54219 525 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 DAD1P61803 113 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 TSPAN5P62079 268 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 TPBGQ13641 420 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 ESRGQ1W209 222 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 PDPNQ86YL7 162 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 FAM223AQ8IWN6 122 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 CTAGE3PQ8IX95 158 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 SELENOHQ8IZQ5 122 aaKnown RBP2.04□□□□□ -2.08
CD44-235ENST00000532339 LINC00471Q8N535 108 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 LINC00311Q8N616 119 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 MIR7-3HGQ8N6C7 128 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 OR8J2Q8NGG1 315 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 ORAOV1Q8WV07 137 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 SMIM8Q96KF7 97 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 AMELYQ99218 206 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 MRPL20Q9BYC9 149 aaKnown RBP2.04□□□□□ -2.08
CD44-235ENST00000532339 ZNF436Q9C0F3 470 aaPredicted RBP2.04□□□□□ -2.08
CD44-235ENST00000532339 FBXL15Q9H469 300 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 RERGLQ9H628 205 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 TMBIM4Q9HC24 238 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 BCL2L10Q9HD36 194 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 MDN1Q9NU22 5596 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 IDI2-AS1Q9NZ38 188 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 RAB22AQ9UL26 194 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms