RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 NIPSNAP3BQ9BS92 247 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 PSENENQ9NZ42 101 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 A0A0J9YX75 114 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 A8MTW9 85 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 F6UB75 175 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 M0R2N4 97 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 MED14OSP0DP75 135 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 S100A7P31151 101 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 MEOX2P50222 304 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 ZNF846Q147U1 533 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 IAH1Q2TAA2 248 aaPredicted RBP8.07□□□□□ -1.12
VPS28-214ENST00000531032 GSG1LQ6UXU4 331 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 Q6ZR54 194 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 LINC00299Q6ZSB3 139 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 C1orf158Q8N1D5 194 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 BPIFCQ8NFQ6 507 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 CCDC32Q9BV29 185 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 GSKIPQ9P0R6 139 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 SLC45A2Q9UMX9 530 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 GOLT1BQ9Y3E0 138 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 DNAH17Q9UFH2 4485 aa8.07□□□□□ -1.12
VPS28-214ENST00000531032 TRAV6A0A075B6T7 132 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 LOC102723971A0A1B0GUV8 181 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 FAM25EA8MYX2 175 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 PRSS46E5RG02 174 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 CFDP00746 253 aaPredicted RBP8.06□□□□□ -1.12
VPS28-214ENST00000531032 HBE1P02100 147 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 OR4D5Q8NGN0 318 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 C20orf173Q96LM9 149 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 C17orf77Q96MU5 243 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 TMEM147Q9BVK8 224 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 SLC25A32Q9H2D1 315 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 RPRMQ9NS64 109 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 DOK5Q9P104 306 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 MGAT4CQ9UBM8 478 aa8.06□□□□□ -1.12
VPS28-214ENST00000531032 YTHDF2Q9Y5A9 579 aaKnown RBP8.06□□□□□ -1.12
VPS28-214ENST00000531032 L7N2F9 121 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 TCRBP04435 133 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 GALR1P47211 349 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 VAMP2P63027 116 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 ID3Q02535 119 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 RRN3P1Q2M238 152 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 RNF212Q495C1 297 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 MZT2BQ6NZ67 158 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 AMTNQ6UX39 209 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 UBE2DNLQ8IWF7 75 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 ZBTB8BQ8NAP8 495 aaPredicted RBP8.05□□□□□ -1.12
VPS28-214ENST00000531032 MITD1Q8WV92 249 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 S100ZQ8WXG8 99 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 C16orf92Q96LL3 132 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 SLC25A22Q9H936 323 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 NUDT15Q9NV35 164 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 PLA2G2EQ9NZK7 142 aa8.05□□□□□ -1.12
VPS28-214ENST00000531032 IGLV2-18A0A075B6J9 118 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 FAM240BA0A1B0GVZ2 78 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 C5orf51A6NDU8 294 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 ZNF98A6NK75 572 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 CCSO14618 274 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 PLA2G10O15496 165 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 METTL15P1P0C7V9 234 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 ORM2P19652 201 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 RRAS2P62070 204 aaPredicted RBP8.04□□□□□ -1.12
VPS28-214ENST00000531032 IFITM3Q01628 133 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 OR10P1Q8NGE3 313 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 OR1B1Q8NGR6 318 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 IGF2BP2-AS1Q96M15 143 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 RSG1Q9BU20 258 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 LSM5Q9Y4Y9 91 aaKnown RBP8.04□□□□□ -1.12
VPS28-214ENST00000531032 NACAE9PAV3 2078 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 PKD1P98161 4303 aa8.04□□□□□ -1.12
VPS28-214ENST00000531032 TSC22D2O75157 780 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 IL5P05113 134 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 HTN3P15516 51 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 RAP2BP61225 183 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 DAD1P61803 113 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 DLK1P80370 383 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 TMEM88Q6PEY1 159 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 TMEM182Q6ZP80 229 aaPredicted RBP8.03□□□□□ -1.12
VPS28-214ENST00000531032 CYP2G1PQ6ZSU1 146 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 TMEM144Q7Z5S9 345 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 S100A7AQ86SG5 101 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 ENKURQ8TC29 256 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 ZNF431Q8TF32 576 aaPredicted RBP8.03□□□□□ -1.12
VPS28-214ENST00000531032 SMIM8Q96KF7 97 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 GPR82Q96P67 336 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 SEC22CQ9BRL7 303 aa8.03□□□□□ -1.12
VPS28-214ENST00000531032 RCL1Q9Y2P8 373 aaKnown RBP8.03□□□□□ -1.12
VPS28-214ENST00000531032 TRAV8-2A0A0B4J237 113 aa8.02□□□□□ -1.13
VPS28-214ENST00000531032 CRXO43186 299 aaPredicted RBP8.02□□□□□ -1.13
VPS28-214ENST00000531032 H2AFB2P0C5Z0 115 aa8.02□□□□□ -1.13
VPS28-214ENST00000531032 LINC00869P0C866 280 aa8.02□□□□□ -1.13
VPS28-214ENST00000531032 GATA2P23769 480 aaPredicted RBP8.02□□□□□ -1.13
VPS28-214ENST00000531032 BCAP31P51572 246 aa8.02□□□□□ -1.13
VPS28-214ENST00000531032 CNN1P51911 297 aaKnown RBP8.02□□□□□ -1.13
VPS28-214ENST00000531032 TAS2R30P59541 319 aa8.02□□□□□ -1.13
VPS28-214ENST00000531032 S100A10P60903 97 aa8.02□□□□□ -1.13
VPS28-214ENST00000531032 C12orf45Q8N5I9 185 aaPredicted RBP8.02□□□□□ -1.13
VPS28-214ENST00000531032 OR11H7Q8NGC8 314 aa8.02□□□□□ -1.13
VPS28-214ENST00000531032 TMEM208Q9BTX3 173 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms