RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 TEX47Q8TBZ9 253 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 ZNF675Q8TD23 568 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 PYDC1Q8WXC3 89 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 BORCS7Q96B45 105 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 MRPS24Q96EL2 167 aaKnown RBP1.97□□□□□ -2.09
CD44-223ENST00000526553 PPP3R2Q96LZ3 170 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 TLNRD1Q9H1K6 362 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 SAR1AQ9NR31 198 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 FAIMQ9NVQ4 179 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 GLTPQ9NZD2 209 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 FAM32AQ9Y421 112 aaKnown RBP1.97□□□□□ -2.09
CD44-223ENST00000526553 BOD1L1Q8NFC6 3051 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 TLN1Q9Y490 2541 aaKnown RBP1.97□□□□□ -2.09
CD44-223ENST00000526553 TNRC6AQ8NDV7 1962 aaKnown RBP1.97□□□□□ -2.09
CD44-223ENST00000526553 CHD5Q8TDI0 1954 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 BSNQ9UPA5 3926 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 USP9YO00507 2555 aaPredicted RBP1.97□□□□□ -2.09
CD44-223ENST00000526553 DIDO1Q9BTC0 2240 aaKnown RBP1.97□□□□□ -2.09
CD44-223ENST00000526553 SCN8AQ9UQD0 1980 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 UBR5O95071 2799 aaPredicted RBP1.96□□□□□ -2.1
CD44-223ENST00000526553 ITPR2Q14571 2701 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 TRGV5A0A0B4J1U4 118 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 KNCNA6PVL3 124 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 FADS1O60427 444 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 CRYZL1O95825 349 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 APOC1P02654 83 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 COX4I1P13073 169 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 HIST1H1TP22492 207 aaPredicted RBP1.96□□□□□ -2.1
CD44-223ENST00000526553 EIF2B2P49770 351 aaKnown RBP1.96□□□□□ -2.1
CD44-223ENST00000526553 RAB13P51153 203 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 EMP1P54849 157 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 HIST1H3AP68431 136 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 H3F3AP84243 136 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 TFAMQ00059 246 aaKnown RBP1.96□□□□□ -2.1
CD44-223ENST00000526553 ZNF846Q147U1 533 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 TMED2Q15363 201 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 GRK1Q15835 563 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 MOGQ16653 247 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 TMEM97Q5BJF2 176 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 PABPC1L2AQ5JQF8 200 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 C6orf52Q5T4I8 152 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 SSX8Q7RTT4 187 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 LHFPL1Q86WI0 220 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 RMND5BQ96G75 393 aaPredicted RBP1.96□□□□□ -2.1
CD44-223ENST00000526553 PRTFDC1Q9NRG1 225 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 PYCARDQ9ULZ3 195 aa1.96□□□□□ -2.1
CD44-223ENST00000526553 ANKRD17O75179 2603 aaKnown RBP1.96□□□□□ -2.1
CD44-223ENST00000526553 CRYBG3Q68DQ2 2970 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 A0A087WXM4 84 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 MUC21A0A0G2JKD1 596 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 MUC21A0A140T8X8 626 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 SDHAF1A6NFY7 115 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 SMIM9A6NGZ8 99 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 C11orf86A6NJI1 115 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 H0YJX3 145 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 PIRO00625 290 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 HCRTO43612 131 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 CST8O60676 142 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 TNFSF15O95150 251 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 HAND1O96004 215 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 HLA-DRB1P01911 266 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 TTRP02766 147 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 ZNF705DP0CH99 300 aaPredicted RBP1.95□□□□□ -2.1
CD44-223ENST00000526553 PSMB8P28062 276 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 CA5AP35218 305 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 CSN1S1P47710 185 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 SNRPD2P62316 118 aaKnown RBP1.95□□□□□ -2.1
CD44-223ENST00000526553 RPL30P62888 115 aaKnown RBP1.95□□□□□ -2.1
CD44-223ENST00000526553 SMCO1Q147U7 214 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 C3orf33Q6P1S2 294 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 C4orf22Q6V702 233 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 Q6ZS49 121 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 ZGRF1Q86YA3 2104 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 PACRGLQ8N7B6 248 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 ZNF283Q8N7M2 679 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 OR5J2Q8NH18 312 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 OR4X1Q8NH49 305 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 DNAJC30Q96LL9 226 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 CMSS1Q9BQ75 279 aaKnown RBP1.95□□□□□ -2.1
CD44-223ENST00000526553 Q9BRP9 147 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 GINS4Q9BRT9 223 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 ULBP3Q9BZM4 244 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 COMMD5Q9GZQ3 224 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 DCSTAMPQ9H295 470 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 NDUFB11Q9NX14 153 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 FBXL12Q9NXK8 326 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 MRPL27Q9P0M9 148 aaKnown RBP1.95□□□□□ -2.1
CD44-223ENST00000526553 FBXO5Q9UKT4 447 aa1.95□□□□□ -2.1
CD44-223ENST00000526553 SETD2Q9BYW2 2564 aaPredicted RBP1.95□□□□□ -2.1
CD44-223ENST00000526553 HIVEP3Q5T1R4 2406 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 A0A0J9YW62 118 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 TMEM269A0A1B0GVZ9 245 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 LY6LH3BQJ8 138 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 OR5F1O95221 314 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 C1QAP02745 245 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 PAEPP09466 180 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 HSD11B1P28845 292 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 ERP29P30040 261 aaKnown RBP1.94□□□□□ -2.1
CD44-223ENST00000526553 S100A7P31151 101 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 PSMD8P48556 350 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms