RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 CIARTQ8N365 385 aaPredicted RBP8.21□□□□□ -1.1
PDGFRB-207ENST00000520579 NPIPB3Q92617 1050 aa8.21□□□□□ -1.1
PDGFRB-207ENST00000520579 URB1-AS1Q96HZ7 61 aa8.21□□□□□ -1.1
PDGFRB-207ENST00000520579 PRELID3AQ96N28 172 aa8.21□□□□□ -1.1
PDGFRB-207ENST00000520579 KIR2DL4Q99706 377 aa8.21□□□□□ -1.1
PDGFRB-207ENST00000520579 RABAC1Q9UI14 185 aa8.21□□□□□ -1.1
PDGFRB-207ENST00000520579 A1L4Q6 167 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 IGLV2-8P01709 118 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 ZNF134P52741 427 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 TRIP6Q15654 476 aaKnown RBP8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 PCP2Q8IVA1 136 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 TTC9CQ8N5M4 171 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 C1orf159Q96HA4 380 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 APC2O95996 2303 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 PEX7O00628 323 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 C8orf88P0DMB2 117 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 EVI2AP22794 236 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 COL8A1P27658 744 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 LINC00322Q6ZN03 302 aaPredicted RBP8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 NHP2Q9NX24 153 aaKnown RBP8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 IGHV3-72A0A0B4J1Y9 119 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 SNCGO76070 127 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 AREGP15514 252 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 HBBP68871 147 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 TBC1D28Q2M2D7 210 aa8.2□□□□□ -1.1
PDGFRB-207ENST00000520579 SPTAN1Q13813 2472 aaKnown RBP8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 SMKR1H3BMG3 65 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 MPDU1O75352 247 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 DUX4L9Q6RFH8 374 aaPredicted RBP8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 Q6ZSR3 168 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 OR1L4Q8NGR5 311 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 C1RLQ9NZP8 487 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 ZNF474Q6S9Z5 364 aaPredicted RBP8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 RAB9BQ9NP90 201 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 SMIM27A0A1W2PRY6 76 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 A8MWL6 223 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 F8W1H4 67 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 LOXL1Q08397 574 aaPredicted RBP8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 MZT1Q08AG7 82 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 C1orf229Q6ZS94 237 aaPredicted RBP8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 C1orf43Q9BWL3 253 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 MAP1LC3AQ9H492 121 aa8.19□□□□□ -1.1
PDGFRB-207ENST00000520579 DMXL2Q8TDJ6 3036 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 SPRY3O43610 288 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 TMEM178AQ8NBL3 297 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 SRSF12Q8WXF0 261 aaKnown RBP8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 S4R3C0 116 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 SPENQ96T58 3664 aaKnown RBP8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 TRAV9-1A0A075B6T8 112 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 SAA2-SAA4A0A096LPE2 208 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 RPL7P18124 248 aaKnown RBP8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 DEFB104AQ8WTQ1 72 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 IGLV3-12A0A075B6K2 115 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 TEX50A0A1B0GTY4 177 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 FNDC10F2Z333 226 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 H3BVH4 76 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 IGKV1-16P04430 117 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 SP1P08047 785 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 SRSF9Q13242 221 aaKnown RBP eCLIP8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 C10orf113Q5VZT2 155 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 ADTRPQ96IZ2 230 aa8.18□□□□□ -1.1
PDGFRB-207ENST00000520579 PATE3B3GLJ2 98 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 HSPE1P61604 102 aaKnown RBP8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 IL11RAQ14626 422 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 SLC35E4Q6ICL7 350 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 PDPNQ86YL7 162 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 C1orf210Q8IVY1 113 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 TXNDC17Q9BRA2 123 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 AP5S1Q9NUS5 200 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 EXPH5Q8NEV8 1989 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 A0A087WX48 190 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 TNFRSF1AP19438 455 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 IMMP1LQ96LU5 166 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 TM2D2Q9BX73 214 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 EDA2RQ9HAV5 297 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 PIEZO2Q9H5I5 2752 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 TACC2O95359 2948 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 IFITM1P13164 125 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 PRDX2P32119 198 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 Q0VFX4 171 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 ATMQ13315 3056 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 GOLT1AQ6ZVE7 132 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 OR13C6PQ8NH95 151 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 SCRT2Q9NQ03 307 aa8.17□□□□□ -1.1
PDGFRB-207ENST00000520579 KALRNO60229 2985 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 IFI27P40305 119 aaPredicted RBP8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 NDUFV3P56181 108 aaKnown RBP8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 FOXI2Q6ZQN5 318 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 LINC00305Q7Z4B0 112 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 C17orf82Q86X59 251 aaPredicted RBP8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 DEFB123Q8N688 67 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 KLF14Q8TD94 323 aaPredicted RBP8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 NRGNQ92686 78 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 C11orf52Q96A22 123 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 IDI2-AS1Q9NZ38 188 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 NOTCH3Q9UM47 2321 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 P0C879 139 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 EXOC3-AS1Q8N2X6 119 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 CD177Q8N6Q3 437 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 DKK1O94907 266 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms