RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 C20orf24Q9BUV8 137 aa12.34□□□□□ -0.43
NUP54-214ENST00000514307 ZNF320A2RRD8 509 aa12.33□□□□□ -0.44
NUP54-214ENST00000514307 K7EMT4 169 aa12.33□□□□□ -0.44
NUP54-214ENST00000514307 SNAPINO95295 136 aa12.33□□□□□ -0.44
NUP54-214ENST00000514307 PYYP10082 97 aa12.33□□□□□ -0.44
NUP54-214ENST00000514307 CRYBB3P26998 211 aa12.33□□□□□ -0.44
NUP54-214ENST00000514307 SUMO1P63165 101 aaKnown RBP12.33□□□□□ -0.44
NUP54-214ENST00000514307 LCNL1Q6ZST4 164 aa12.33□□□□□ -0.44
NUP54-214ENST00000514307 LYPD1Q8N2G4 141 aa12.33□□□□□ -0.44
NUP54-214ENST00000514307 ZFAND3Q9H8U3 227 aa12.33□□□□□ -0.44
NUP54-214ENST00000514307 ZANQ9Y493 2812 aa12.33□□□□□ -0.44
NUP54-214ENST00000514307 BMI1P35226 326 aa12.32□□□□□ -0.44
NUP54-214ENST00000514307 MEOX2P50222 304 aa12.32□□□□□ -0.44
NUP54-214ENST00000514307 RPEL1Q2QD12 228 aa12.32□□□□□ -0.44
NUP54-214ENST00000514307 LEMD1Q68G75 181 aa12.32□□□□□ -0.44
NUP54-214ENST00000514307 C10orf99Q6UWK7 81 aa12.32□□□□□ -0.44
NUP54-214ENST00000514307 CYB561D1Q8N8Q1 229 aa12.32□□□□□ -0.44
NUP54-214ENST00000514307 UFC1Q9Y3C8 167 aa12.32□□□□□ -0.44
NUP54-214ENST00000514307 YTHDF2Q9Y5A9 579 aaKnown RBP12.32□□□□□ -0.44
NUP54-214ENST00000514307 MTORP42345 2549 aa12.31□□□□□ -0.44
NUP54-214ENST00000514307 ZNF785A8K8V0 405 aa12.31□□□□□ -0.44
NUP54-214ENST00000514307 BUB3O43684 328 aa12.31□□□□□ -0.44
NUP54-214ENST00000514307 GP9P14770 177 aa12.31□□□□□ -0.44
NUP54-214ENST00000514307 GALR1P47211 349 aa12.31□□□□□ -0.44
NUP54-214ENST00000514307 RANP62826 216 aaKnown RBP12.31□□□□□ -0.44
NUP54-214ENST00000514307 LINC01006Q8NI28 216 aa12.31□□□□□ -0.44
NUP54-214ENST00000514307 BLNKQ8WV28 456 aa12.31□□□□□ -0.44
NUP54-214ENST00000514307 DPF1Q92782 380 aa12.31□□□□□ -0.44
NUP54-214ENST00000514307 OR5B12Q96R08 314 aa12.31□□□□□ -0.44
NUP54-214ENST00000514307 NIPSNAP3BQ9BS92 247 aa12.31□□□□□ -0.44
NUP54-214ENST00000514307 U3KQE9 123 aa12.31□□□□□ -0.44
NUP54-214ENST00000514307 A0A1B0GUS0 222 aa12.3□□□□□ -0.44
NUP54-214ENST00000514307 ZNF727A8MUV8 499 aa12.3□□□□□ -0.44
NUP54-214ENST00000514307 TRBV12-3P01733 135 aa12.3□□□□□ -0.44
NUP54-214ENST00000514307 ATF4P18848 351 aaPredicted RBP12.3□□□□□ -0.44
NUP54-214ENST00000514307 PSG9Q00887 426 aa12.3□□□□□ -0.44
NUP54-214ENST00000514307 PDE6HQ13956 83 aa12.3□□□□□ -0.44
NUP54-214ENST00000514307 TMEM241Q24JQ0 296 aa12.3□□□□□ -0.44
NUP54-214ENST00000514307 CCDC28AQ8IWP9 274 aa12.3□□□□□ -0.44
NUP54-214ENST00000514307 ELOVL1Q9BW60 279 aa12.3□□□□□ -0.44
NUP54-214ENST00000514307 TRBV19A0A075B6N1 114 aa12.29□□□□□ -0.44
NUP54-214ENST00000514307 CLPSL1A2RUU4 121 aa12.29□□□□□ -0.44
NUP54-214ENST00000514307 PGPA6NDG6 321 aa12.29□□□□□ -0.44
NUP54-214ENST00000514307 S100A9P06702 114 aaKnown RBP12.29□□□□□ -0.44
NUP54-214ENST00000514307 ATP5G3P48201 142 aa12.29□□□□□ -0.44
NUP54-214ENST00000514307 C4orf3Q8WVX3 66 aa12.29□□□□□ -0.44
NUP54-214ENST00000514307 HIST1H2BAQ96A08 127 aa12.29□□□□□ -0.44
NUP54-214ENST00000514307 TVP23CQ96ET8 276 aa12.29□□□□□ -0.44
NUP54-214ENST00000514307 SMIM7Q9BQ49 75 aa12.29□□□□□ -0.44
NUP54-214ENST00000514307 OTORQ9NRC9 128 aa12.29□□□□□ -0.44
NUP54-214ENST00000514307 ZNF586Q9NXT0 402 aa12.29□□□□□ -0.44
NUP54-214ENST00000514307 C2CD3Q4AC94 2353 aa12.29□□□□□ -0.44
NUP54-214ENST00000514307 HIVEP2P31629 2446 aa12.28□□□□□ -0.44
NUP54-214ENST00000514307 HELTA6NFD8 242 aa12.28□□□□□ -0.44
NUP54-214ENST00000514307 H3BQ15 152 aa12.28□□□□□ -0.44
NUP54-214ENST00000514307 LGALS9O00182 355 aa12.28□□□□□ -0.44
NUP54-214ENST00000514307 NDUFB4O95168 129 aa12.28□□□□□ -0.44
NUP54-214ENST00000514307 IGLC2P0DOY2 106 aa12.28□□□□□ -0.44
NUP54-214ENST00000514307 PNRC1Q12796 327 aaPredicted RBP12.28□□□□□ -0.44
NUP54-214ENST00000514307 CMTM2Q8TAZ6 248 aa12.28□□□□□ -0.44
NUP54-214ENST00000514307 ZNF414Q96IQ9 312 aa12.28□□□□□ -0.44
NUP54-214ENST00000514307 AAMDCQ9H7C9 122 aa12.28□□□□□ -0.44
NUP54-214ENST00000514307 DAZ1Q9NQZ3 744 aaKnown RBP12.28□□□□□ -0.44
NUP54-214ENST00000514307 EPDR1Q9UM22 224 aa12.28□□□□□ -0.44
NUP54-214ENST00000514307 RNF114Q9Y508 228 aa12.28□□□□□ -0.44
NUP54-214ENST00000514307 IGHV3OR16-8A0A075B7F1 116 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 B4DEV8 164 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 ZNF253O75346 499 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 SLC25A5P05141 298 aaKnown RBP12.27□□□□□ -0.45
NUP54-214ENST00000514307 ADCYAP1P18509 176 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 ZNF674Q2M3X9 581 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 FAM90A2PQ658T7 463 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 C16orf54Q6UWD8 224 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 ARL6IP6Q8N6S5 226 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 OR1N2Q8NGR9 330 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 C11orf52Q96A22 123 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 CLEC5AQ9NY25 188 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 NAT8Q9UHE5 227 aa12.27□□□□□ -0.45
NUP54-214ENST00000514307 LINC01619G3V211 115 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 M0R036 132 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 HAX1O00165 279 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 MRPS12O15235 138 aaKnown RBP12.26□□□□□ -0.45
NUP54-214ENST00000514307 ZNF207O43670 478 aaKnown RBP12.26□□□□□ -0.45
NUP54-214ENST00000514307 CSN1S1P47710 185 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 KHDC1LQ5JSQ8 128 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 REC114Q7Z4M0 266 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 C5orf17Q8NAS9 161 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 CLRN3Q8NCR9 226 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 WIPF2Q8TF74 440 aaPredicted RBP12.26□□□□□ -0.45
NUP54-214ENST00000514307 PARLQ9H300 379 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 Q9H3A6 140 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 SMPXQ9UHP9 88 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 PRELID1Q9Y255 219 aa12.26□□□□□ -0.45
NUP54-214ENST00000514307 TSSC4Q9Y5U2 329 aaPredicted RBP12.26□□□□□ -0.45
NUP54-214ENST00000514307 A0A087X0K7 114 aa12.25□□□□□ -0.45
NUP54-214ENST00000514307 IGHV7-4-1A0A0J9YVY3 117 aa12.25□□□□□ -0.45
NUP54-214ENST00000514307 GGTLC3B5MD39 225 aa12.25□□□□□ -0.45
NUP54-214ENST00000514307 K7EQM0 130 aa12.25□□□□□ -0.45
NUP54-214ENST00000514307 MYCNOSP40205 109 aa12.25□□□□□ -0.45
NUP54-214ENST00000514307 CNN1P51911 297 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms