RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 LGALSLQ3ZCW2 172 aaPredicted RBP6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 FAM78BQ5VT40 261 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 PATE2Q6UY27 113 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 OR2G3Q8NGZ4 309 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 LRRC20Q8TCA0 184 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 TMEM37Q8WXS4 190 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 GPR82Q96P67 336 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 PRR25Q96S07 402 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 SPAG8Q99932 426 aaPredicted RBP6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 SHANK2-AS3Q9BTD1 123 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 SCRT1Q9BWW7 348 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 SLC25A32Q9H2D1 315 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 TIMM9Q9Y5J7 89 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 U3KQE9 123 aa6.19□□□□□ -1.42
LIMCH1-206ENST00000505705 OR4C46A6NHA9 309 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 MBP02144 154 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 PRB2P02812 416 aaPredicted RBP6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 TPT1P13693 172 aaKnown RBP6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 RPL7P18124 248 aaKnown RBP6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 M6PRP20645 277 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 CD81P60033 236 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 SERF2P84101 59 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 EGFEM1PQ0D2K5 195 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 DEFB121Q5J5C9 76 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 GCSAMLQ5JQS6 135 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 AKR1C8PQ5T2L2 129 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 BPIFA4PQ86YQ2 179 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 OR10G4Q8NGN3 311 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 OR10G9Q8NGN4 311 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 OR10G7Q8NGN6 311 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 GLMPQ8WWB7 406 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 PSMG3Q9BT73 122 aaPredicted RBP6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 MS4A6AQ9H2W1 248 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 RFNGQ9Y644 331 aa6.18□□□□□ -1.42
LIMCH1-206ENST00000505705 CMYA5Q8N3K9 4069 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 TRAV5A0A0B4J249 113 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 LORP23490 312 aaPredicted RBP6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 ID1P41134 155 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 NKX2-5P52952 324 aaPredicted RBP6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 CMC4P56277 68 aaPredicted RBP6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 TAS2R45P59539 299 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 RHOBP62745 196 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 FAM90A2PQ658T7 463 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 FAM122CQ6P4D5 195 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 C16orf92Q96LL3 132 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 MRPL32Q9BYC8 188 aaKnown RBP6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 SH3BGRL3Q9H299 93 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 SEPSECSQ9HD40 501 aaKnown RBP6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 NRN1Q9NPD7 142 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 CYTL1Q9NRR1 136 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 AURKAIP1Q9NWT8 199 aaPredicted RBP6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 UBQLN2Q9UHD9 624 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 FUT9Q9Y231 359 aa6.17□□□□□ -1.42
LIMCH1-206ENST00000505705 OR7C2O60412 319 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 SNRPCP09234 159 aaKnown RBP6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 CD7P09564 240 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 CDC34P49427 236 aaPredicted RBP6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 MEOX2P50222 304 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 RAB2AP61019 212 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 SNRPD3P62318 126 aaKnown RBP6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 DEFA6Q01524 100 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 TMEM41BQ5BJD5 291 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 KPRPQ5T749 579 aaPredicted RBP6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 MORN5Q5VZ52 161 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 SPATA31B1PQ5VZV4 182 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 EIF5AL1Q6IS14 154 aaKnown RBP6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 MIR17HGQ75NE6 70 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 SLC51BQ86UW2 128 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 BAP18Q8IXM2 172 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 LINC00052Q96N35 136 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 TUBA4BQ9H853 241 aa6.16□□□□□ -1.42
LIMCH1-206ENST00000505705 TRAV2A0A0B4J234 112 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 OR11H12B2RN74 326 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 HMGB3O15347 200 aaKnown RBP6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 SEC11BP0C7V7 166 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 ZNF688P0C7X2 276 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 SPP1P10451 314 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 KHDC3LQ587J8 217 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 SAMD13Q5VXD3 122 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 IQCF2Q8IXL9 164 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 C9orf62Q8N4C0 152 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 MRAPQ8TCY5 172 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 BLNKQ8WV28 456 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 PAXXQ9BUH6 204 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 ACTR3CQ9C0K3 210 aaPredicted RBP6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 OR51M1Q9H341 326 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 SMAD5-AS1Q9Y6J3 95 aa6.15□□□□□ -1.42
LIMCH1-206ENST00000505705 H3BTX0 84 aa6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 K7EQG2 157 aa6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 EIF3GO75821 320 aaKnown RBP eCLIP6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 OR10J4P0C629 311 aa6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 PYYP10082 97 aa6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 DEFB131AP59861 70 aa6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 PSMG4Q5JS54 123 aa6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 APRG1Q8IVJ8 170 aa6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 LINC00528Q8N1L1 170 aa6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 DEFB125Q8N687 156 aa6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 STOML3Q8TAV4 291 aa6.14□□□□□ -1.43
LIMCH1-206ENST00000505705 DCANP1Q8TF63 244 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms