RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 INSIG2Q9Y5U4 225 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 TRAV8-1A0A0A6YYK1 113 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 K7EQM0 130 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 IGHV3-48P01763 117 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 GOLT1AQ6ZVE7 132 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 TDHQ8IZJ6 230 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 ORMDL3Q8N138 153 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 FAM216BQ8N7L0 139 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 ZNF414Q96IQ9 312 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 CCL13Q99616 98 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 PROCRQ9UNN8 238 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 CACNA1GO43497 2377 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 FAM186AA6NE01 2351 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 CEP290O15078 2479 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 A0A1W2PNU3 283 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-230ENST00000495090 SMIM13P0DJ93 91 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 PPIAL4GP0DN37 164 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 MC5RP33032 325 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 CACNG7P62955 275 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 TNFAIP6P98066 277 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-230ENST00000495090 MRGPRG-AS1Q2M3A8 158 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 LINC01559Q495D7 138 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 SAMD5Q5TGI4 173 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 FAM104BQ5XKR9 115 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 IFI27L1Q96BM0 104 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 SMPXQ9UHP9 88 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 TIMM8BQ9Y5J9 83 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-230ENST00000495090 HILPDAQ9Y5L2 63 aa7.7□□□□□ -1.18
SYNE1-230ENST00000495090 HLA-DRB4P13762 266 aa7.69□□□□□ -1.18
SYNE1-230ENST00000495090 UBALD2Q8IYN6 164 aa7.69□□□□□ -1.18
SYNE1-230ENST00000495090 PRELID3AQ96N28 172 aa7.69□□□□□ -1.18
SYNE1-230ENST00000495090 SLC25A39Q9BZJ4 359 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-230ENST00000495090 HLA-DRB4X5D2U9 266 aa7.69□□□□□ -1.18
SYNE1-230ENST00000495090 PCNX2A6NKB5 2137 aa7.69□□□□□ -1.18
SYNE1-230ENST00000495090 PRR14LQ5THK1 2151 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 TRBV19A0A075B6N1 114 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 LINC01546A6NGU7 62 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 D6R8Y8 96 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 IGHV1-46P01743 117 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 FAM106CPP0CH98 169 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 TNFRSF1AP19438 455 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 CCL11P51671 97 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 LOXL1Q08397 574 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-230ENST00000495090 FAM106AQ4KMX7 169 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 RUSC1-AS1Q66K80 236 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 WFDC8Q8IUA0 241 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 SCNM1Q9BWG6 230 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 PSG8Q9UQ74 426 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 RAI1Q7Z5J4 1906 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-230ENST00000495090 SERTM2A0A1B0GWG4 89 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 FBLL1A6NHQ2 334 aaKnown RBP7.68□□□□□ -1.18
SYNE1-230ENST00000495090 K7EM74 188 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 KLK10O43240 276 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 SLC25A17O43808 307 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 FTH1P19P0C7X4 201 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 RPL27AP46776 148 aaKnown RBP7.68□□□□□ -1.18
SYNE1-230ENST00000495090 ODF1Q14990 250 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 FOXI2Q6ZQN5 318 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 COX8CQ7Z4L0 72 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 EXOC3-AS1Q8N2X6 119 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 DEFB108BQ8NET1 73 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 RITA1Q96K30 269 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 ZMAT4Q9H898 229 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 MED13Q9UHV7 2174 aa7.68□□□□□ -1.18
SYNE1-230ENST00000495090 FREM2Q5SZK8 3169 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 H3BTX0 84 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 J3QR89 54 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 M0R1B8 84 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 CRIP1P50238 77 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 SRSF1Q07955 248 aaKnown RBP eCLIP7.67□□□□□ -1.18
SYNE1-230ENST00000495090 HCP5Q6MZN7 132 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 PRSS57Q6UWY2 283 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 SIGLEC15Q6ZMC9 328 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 PCP2Q8IVA1 136 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 RAB37Q96AX2 223 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 SIGMAR1Q99720 223 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 VGLL1Q99990 258 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 NGBQ9NPG2 151 aa7.67□□□□□ -1.18
SYNE1-230ENST00000495090 F11RQ9Y624 299 aaKnown RBP7.67□□□□□ -1.18
SYNE1-230ENST00000495090 TEX48A0A1B0GUV7 120 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 F8W1H4 67 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 NDUFS7O75251 213 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 CRYGBP07316 175 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 LYZP61626 148 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 PHLDA1Q8WV24 401 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-230ENST00000495090 NAA38Q9BRA0 125 aaKnown RBP7.66□□□□□ -1.18
SYNE1-230ENST00000495090 SHANK2-AS3Q9BTD1 123 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 TM2D2Q9BX73 214 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 TPSG1Q9NRR2 321 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 PPIAL4CA0A0B4J2A2 164 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 A0A1B0GV72 72 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 H3BRN7 92 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 CCL3L1P16619 93 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 NMUP48645 174 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 CD300EQ496F6 205 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-230ENST00000495090 MRPL51Q4U2R6 128 aaKnown RBP7.66□□□□□ -1.18
SYNE1-230ENST00000495090 TMEM200BQ69YZ2 307 aa7.66□□□□□ -1.18
SYNE1-230ENST00000495090 PRUNE2Q8WUY3 3088 aa7.65□□□□□ -1.18
SYNE1-230ENST00000495090 FRYLO94915 3013 aa7.65□□□□□ -1.18
SYNE1-230ENST00000495090 LOC389332A0A1B0GUA5 103 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms