RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 VAMP1P23763 118 aa8.92□□□□□ -0.98
SKA1-205ENST00000494518 CNN1P51911 297 aaKnown RBP8.92□□□□□ -0.98
SKA1-205ENST00000494518 SRPXP78539 464 aa8.92□□□□□ -0.98
SKA1-205ENST00000494518 OXA1LQ15070 435 aa8.92□□□□□ -0.98
SKA1-205ENST00000494518 FCN2Q15485 313 aa8.92□□□□□ -0.98
SKA1-205ENST00000494518 RNF212Q495C1 297 aa8.92□□□□□ -0.98
SKA1-205ENST00000494518 BAP18Q8IXM2 172 aa8.92□□□□□ -0.98
SKA1-205ENST00000494518 OR11H7Q8NGC8 314 aa8.92□□□□□ -0.98
SKA1-205ENST00000494518 OR1B1Q8NGR6 318 aa8.92□□□□□ -0.98
SKA1-205ENST00000494518 DYNC2LI1Q8TCX1 351 aa8.92□□□□□ -0.98
SKA1-205ENST00000494518 CCDC59Q9P031 241 aaKnown RBP8.92□□□□□ -0.98
SKA1-205ENST00000494518 APOBP04114 4563 aaKnown RBP8.92□□□□□ -0.98
SKA1-205ENST00000494518 TRAV12-2A0A075B6T6 113 aa8.91□□□□□ -0.98
SKA1-205ENST00000494518 TRAV8-2A0A0B4J237 113 aa8.91□□□□□ -0.98
SKA1-205ENST00000494518 INSP01308 110 aa8.91□□□□□ -0.98
SKA1-205ENST00000494518 MEOX2P50222 304 aa8.91□□□□□ -0.98
SKA1-205ENST00000494518 ATP5IP56385 69 aaPredicted RBP8.91□□□□□ -0.98
SKA1-205ENST00000494518 AKR1C1Q04828 323 aa8.91□□□□□ -0.98
SKA1-205ENST00000494518 ATG101Q9BSB4 218 aa8.91□□□□□ -0.98
SKA1-205ENST00000494518 TMEM147Q9BVK8 224 aa8.91□□□□□ -0.98
SKA1-205ENST00000494518 SLC25A39Q9BZJ4 359 aaPredicted RBP8.91□□□□□ -0.98
SKA1-205ENST00000494518 RSL24D1Q9UHA3 163 aaKnown RBP8.91□□□□□ -0.98
SKA1-205ENST00000494518 DNAH5Q8TE73 4624 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 SMCO3A2RU48 225 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 FABP12A6NFH5 140 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 A8MTW9 85 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 PRSS46E5RG02 174 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 CRXO43186 299 aaPredicted RBP8.9□□□□□ -0.98
SKA1-205ENST00000494518 NUDT3O95989 172 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 HOXB5P09067 269 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 AZU1P20160 251 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 TNFSF8P32971 234 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 SPANXN5Q5MJ07 72 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 SAMD13Q5VXD3 122 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 GGNBP1Q5YKI7 109 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 ACOT7LQ6ZUV0 252 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 ZNF738Q8NE65 137 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 BPIFCQ8NFQ6 507 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 RABL2AQ9UBK7 228 aaPredicted RBP8.9□□□□□ -0.98
SKA1-205ENST00000494518 RABL2BQ9UNT1 228 aa8.9□□□□□ -0.98
SKA1-205ENST00000494518 DUXBA0A1W2PPF3 345 aa8.89□□□□□ -0.99
SKA1-205ENST00000494518 F5H768 121 aa8.89□□□□□ -0.99
SKA1-205ENST00000494518 SYNGR2O43760 224 aa8.89□□□□□ -0.99
SKA1-205ENST00000494518 MED6O75586 246 aa8.89□□□□□ -0.99
SKA1-205ENST00000494518 PPP1R1AQ13522 171 aa8.89□□□□□ -0.99
SKA1-205ENST00000494518 TMEM128Q5BJH2 165 aa8.89□□□□□ -0.99
SKA1-205ENST00000494518 C15orf53Q8NAA6 179 aa8.89□□□□□ -0.99
SKA1-205ENST00000494518 RAB2BQ8WUD1 216 aa8.89□□□□□ -0.99
SKA1-205ENST00000494518 SOSTQ9BQB4 213 aa8.89□□□□□ -0.99
SKA1-205ENST00000494518 SLIRPQ9GZT3 109 aaKnown RBP8.89□□□□□ -0.99
SKA1-205ENST00000494518 C16orf90A8MZG2 172 aa8.88□□□□□ -0.99
SKA1-205ENST00000494518 H3BRN7 92 aa8.88□□□□□ -0.99
SKA1-205ENST00000494518 DUSP14O95147 198 aaKnown RBP8.88□□□□□ -0.99
SKA1-205ENST00000494518 HTN1P15515 57 aa8.88□□□□□ -0.99
SKA1-205ENST00000494518 FAUP35544 74 aaKnown RBP8.88□□□□□ -0.99
SKA1-205ENST00000494518 RHOBP62745 196 aa8.88□□□□□ -0.99
SKA1-205ENST00000494518 HIST1H1AQ02539 215 aaPredicted RBP8.88□□□□□ -0.99
SKA1-205ENST00000494518 PYDC2Q56P42 97 aa8.88□□□□□ -0.99
SKA1-205ENST00000494518 TRIM63Q969Q1 353 aa8.88□□□□□ -0.99
SKA1-205ENST00000494518 CIB3Q96Q77 187 aaPredicted RBP8.88□□□□□ -0.99
SKA1-205ENST00000494518 SLC45A2Q9UMX9 530 aa8.88□□□□□ -0.99
SKA1-205ENST00000494518 PLAC8L1A1L4L8 177 aa8.87□□□□□ -0.99
SKA1-205ENST00000494518 LYRM9A8MSI8 78 aa8.87□□□□□ -0.99
SKA1-205ENST00000494518 BOLA2-SMG1P6H3BVE0 249 aa8.87□□□□□ -0.99
SKA1-205ENST00000494518 SFT2D2O95562 160 aa8.87□□□□□ -0.99
SKA1-205ENST00000494518 CFDP00746 253 aaPredicted RBP8.87□□□□□ -0.99
SKA1-205ENST00000494518 RPP30P78346 268 aaKnown RBP8.87□□□□□ -0.99
SKA1-205ENST00000494518 CYP2G1PQ6ZSU1 146 aa8.87□□□□□ -0.99
SKA1-205ENST00000494518 TOMM5Q8N4H5 51 aa8.87□□□□□ -0.99
SKA1-205ENST00000494518 LRTM2Q8N967 370 aa8.87□□□□□ -0.99
SKA1-205ENST00000494518 OR4D5Q8NGN0 318 aa8.87□□□□□ -0.99
SKA1-205ENST00000494518 MCFD2Q8NI22 146 aa8.87□□□□□ -0.99
SKA1-205ENST00000494518 UHRF2Q96PU4 802 aa8.87□□□□□ -0.99
SKA1-205ENST00000494518 LINC01587Q99440 93 aa8.87□□□□□ -0.99
SKA1-205ENST00000494518 STRAPQ9Y3F4 350 aaKnown RBP8.87□□□□□ -0.99
SKA1-205ENST00000494518 NBDYA0A0U1RRE5 68 aa8.86□□□□□ -0.99
SKA1-205ENST00000494518 H3BMQ9 156 aa8.86□□□□□ -0.99
SKA1-205ENST00000494518 CCNKO75909 580 aa8.86□□□□□ -0.99
SKA1-205ENST00000494518 IL5P05113 134 aa8.86□□□□□ -0.99
SKA1-205ENST00000494518 SNRPCP09234 159 aaKnown RBP8.86□□□□□ -0.99
SKA1-205ENST00000494518 OR5G3P0C626 314 aa8.86□□□□□ -0.99
SKA1-205ENST00000494518 SLC25A6P12236 298 aa8.86□□□□□ -0.99
SKA1-205ENST00000494518 RRAS2P62070 204 aaPredicted RBP8.86□□□□□ -0.99
SKA1-205ENST00000494518 ZNRF2Q8NHG8 242 aa8.86□□□□□ -0.99
SKA1-205ENST00000494518 GPR82Q96P67 336 aa8.86□□□□□ -0.99
SKA1-205ENST00000494518 SHANK2-AS3Q9BTD1 123 aa8.86□□□□□ -0.99
SKA1-205ENST00000494518 PPP1R14DQ9NXH3 145 aa8.86□□□□□ -0.99
SKA1-205ENST00000494518 HIGD1AQ9Y241 93 aa8.86□□□□□ -0.99
SKA1-205ENST00000494518 PIGBOS1A0A0B4J2F0 54 aa8.85□□□□□ -0.99
SKA1-205ENST00000494518 NOL3O60936 208 aaKnown RBP8.85□□□□□ -0.99
SKA1-205ENST00000494518 ADAP1O75689 374 aa8.85□□□□□ -0.99
SKA1-205ENST00000494518 LINC00869P0C866 280 aa8.85□□□□□ -0.99
SKA1-205ENST00000494518 TMBIM6P55061 237 aa8.85□□□□□ -0.99
SKA1-205ENST00000494518 RAP2BP61225 183 aa8.85□□□□□ -0.99
SKA1-205ENST00000494518 POLR2GP62487 172 aaKnown RBP eCLIP8.85□□□□□ -0.99
SKA1-205ENST00000494518 C6orf223Q8N319 242 aa8.85□□□□□ -0.99
SKA1-205ENST00000494518 OR8A1Q8NGG7 326 aa8.85□□□□□ -0.99
SKA1-205ENST00000494518 RNF141Q8WVD5 230 aa8.85□□□□□ -0.99
SKA1-205ENST00000494518 LINC00588Q9Y4M8 146 aa8.85□□□□□ -0.99
SKA1-205ENST00000494518 SSSCA1O60232 199 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms