RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 IZUMO1RA6ND01 250 aa12.97□□□□□ -0.33
LIME1-208ENST00000493265 IGLV1-51P01701 117 aa12.97□□□□□ -0.33
LIME1-208ENST00000493265 M6PRP20645 277 aa12.97□□□□□ -0.33
LIME1-208ENST00000493265 SERF2P84101 59 aa12.97□□□□□ -0.33
LIME1-208ENST00000493265 BEAN1Q3B7T3 259 aa12.97□□□□□ -0.33
LIME1-208ENST00000493265 AKR1C8PQ5T2L2 129 aa12.97□□□□□ -0.33
LIME1-208ENST00000493265 RBPMS2Q6ZRY4 209 aaKnown RBP12.97□□□□□ -0.33
LIME1-208ENST00000493265 MIR17HGQ75NE6 70 aa12.97□□□□□ -0.33
LIME1-208ENST00000493265 GBGT1Q8N5D6 347 aa12.97□□□□□ -0.33
LIME1-208ENST00000493265 STOML3Q8TAV4 291 aa12.97□□□□□ -0.33
LIME1-208ENST00000493265 SEPSECSQ9HD40 501 aaKnown RBP12.97□□□□□ -0.33
LIME1-208ENST00000493265 A0A1W2PPV4 95 aa12.96□□□□□ -0.33
LIME1-208ENST00000493265 TFPI2P48307 235 aa12.96□□□□□ -0.33
LIME1-208ENST00000493265 INSL3P51460 131 aa12.96□□□□□ -0.33
LIME1-208ENST00000493265 RHOBP62745 196 aa12.96□□□□□ -0.33
LIME1-208ENST00000493265 GUCA2BQ16661 112 aa12.96□□□□□ -0.33
LIME1-208ENST00000493265 TMEM41BQ5BJD5 291 aa12.96□□□□□ -0.33
LIME1-208ENST00000493265 WFDC3Q8IUB2 231 aa12.96□□□□□ -0.33
LIME1-208ENST00000493265 TMEM61Q8N0U2 210 aa12.96□□□□□ -0.33
LIME1-208ENST00000493265 GLMPQ8WWB7 406 aa12.96□□□□□ -0.33
LIME1-208ENST00000493265 GPR61Q9BZJ8 451 aa12.96□□□□□ -0.33
LIME1-208ENST00000493265 HMGB3O15347 200 aaKnown RBP12.95□□□□□ -0.34
LIME1-208ENST00000493265 MBP02144 154 aa12.95□□□□□ -0.34
LIME1-208ENST00000493265 SNRPCP09234 159 aaKnown RBP12.95□□□□□ -0.34
LIME1-208ENST00000493265 SEC11BP0C7V7 166 aa12.95□□□□□ -0.34
LIME1-208ENST00000493265 SIGLEC15Q6ZMC9 328 aa12.95□□□□□ -0.34
LIME1-208ENST00000493265 STXBP6Q8NFX7 210 aa12.95□□□□□ -0.34
LIME1-208ENST00000493265 RPRMQ9NS64 109 aa12.95□□□□□ -0.34
LIME1-208ENST00000493265 FUT9Q9Y231 359 aa12.95□□□□□ -0.34
LIME1-208ENST00000493265 HELTA6NFD8 242 aa12.94□□□□□ -0.34
LIME1-208ENST00000493265 C1orf194Q5T5A4 169 aa12.94□□□□□ -0.34
LIME1-208ENST00000493265 LCN12Q6JVE5 192 aa12.94□□□□□ -0.34
LIME1-208ENST00000493265 MRPL32Q9BYC8 188 aaKnown RBP12.94□□□□□ -0.34
LIME1-208ENST00000493265 PLA2G2EQ9NZK7 142 aa12.94□□□□□ -0.34
LIME1-208ENST00000493265 ZNF785A8K8V0 405 aa12.93□□□□□ -0.34
LIME1-208ENST00000493265 DNASE2O00115 360 aaPredicted RBP12.93□□□□□ -0.34
LIME1-208ENST00000493265 ATF4P18848 351 aaPredicted RBP12.93□□□□□ -0.34
LIME1-208ENST00000493265 GALR1P47211 349 aa12.93□□□□□ -0.34
LIME1-208ENST00000493265 CDC34P49427 236 aaPredicted RBP12.93□□□□□ -0.34
LIME1-208ENST00000493265 SAMD5Q5TGI4 173 aa12.93□□□□□ -0.34
LIME1-208ENST00000493265 EIF5AL1Q6IS14 154 aaKnown RBP12.93□□□□□ -0.34
LIME1-208ENST00000493265 RPP25LQ8N5L8 163 aaKnown RBP12.93□□□□□ -0.34
LIME1-208ENST00000493265 SLC25A2Q9BXI2 301 aa12.93□□□□□ -0.34
LIME1-208ENST00000493265 ACTR3CQ9C0K3 210 aaPredicted RBP12.93□□□□□ -0.34
LIME1-208ENST00000493265 H3BTX0 84 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 OR7C2O60412 319 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 RPL7P18124 248 aaKnown RBP12.92□□□□□ -0.34
LIME1-208ENST00000493265 FAM74A1Q5RGS3 127 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 KPRPQ5T749 579 aaPredicted RBP12.92□□□□□ -0.34
LIME1-208ENST00000493265 FAM90A2PQ658T7 463 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 ALKAL2Q6UX46 152 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 BPIFA4PQ86YQ2 179 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 OR2K2Q8NGT1 345 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 FAM213BQ8TBF2 198 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 RAB24Q969Q5 203 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 MS4A6AQ9H2W1 248 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 RNF24Q9Y225 148 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 SMAD5-AS1Q9Y6J3 95 aa12.92□□□□□ -0.34
LIME1-208ENST00000493265 CD5P06127 495 aa12.91□□□□□ -0.34
LIME1-208ENST00000493265 PYYP10082 97 aa12.91□□□□□ -0.34
LIME1-208ENST00000493265 FHITP49789 147 aa12.91□□□□□ -0.34
LIME1-208ENST00000493265 PAFAH1B2P68402 229 aa12.91□□□□□ -0.34
LIME1-208ENST00000493265 SSX7Q7RTT5 188 aa12.91□□□□□ -0.34
LIME1-208ENST00000493265 GPR82Q96P67 336 aa12.91□□□□□ -0.34
LIME1-208ENST00000493265 TRAV25A0A0B4J276 109 aa12.9□□□□□ -0.34
LIME1-208ENST00000493265 TSPAN4O14817 238 aa12.9□□□□□ -0.34
LIME1-208ENST00000493265 OR10J4P0C629 311 aa12.9□□□□□ -0.34
LIME1-208ENST00000493265 TAS2R45P59539 299 aa12.9□□□□□ -0.34
LIME1-208ENST00000493265 KHDC3LQ587J8 217 aa12.9□□□□□ -0.34
LIME1-208ENST00000493265 IQCF2Q8IXL9 164 aa12.9□□□□□ -0.34
LIME1-208ENST00000493265 FAM167A-AS1Q96KT0 104 aa12.9□□□□□ -0.34
LIME1-208ENST00000493265 PAXXQ9BUH6 204 aa12.9□□□□□ -0.34
LIME1-208ENST00000493265 UMAD1C9J7I0 102 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 GP9P14770 177 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 KRTAP10-11P60412 298 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 ZNF726P1Q15940 193 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 LCN15Q6UWW0 184 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 LRRC20Q8TCA0 184 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 MRAPQ8TCY5 172 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 BLNKQ8WV28 456 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 C17orf77Q96MU5 243 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 PRR25Q96S07 402 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 OR51M1Q9H341 326 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 NRN1Q9NPD7 142 aa12.89□□□□□ -0.35
LIME1-208ENST00000493265 CTXND1A0A1B0GTU2 59 aa12.88□□□□□ -0.35
LIME1-208ENST00000493265 A0A1B0GV50 99 aa12.88□□□□□ -0.35
LIME1-208ENST00000493265 OR4C46A6NHA9 309 aa12.88□□□□□ -0.35
LIME1-208ENST00000493265 H3BQ15 152 aa12.88□□□□□ -0.35
LIME1-208ENST00000493265 MRPS12O15235 138 aaKnown RBP12.88□□□□□ -0.35
LIME1-208ENST00000493265 FGF8P55075 233 aaPredicted RBP12.88□□□□□ -0.35
LIME1-208ENST00000493265 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.88□□□□□ -0.35
LIME1-208ENST00000493265 SPAG8Q99932 426 aaPredicted RBP12.88□□□□□ -0.35
LIME1-208ENST00000493265 ZNF256Q9Y2P7 627 aaPredicted RBP12.88□□□□□ -0.35
LIME1-208ENST00000493265 NOTCH3Q9UM47 2321 aa12.87□□□□□ -0.35
LIME1-208ENST00000493265 DNAH3Q8TD57 4116 aa12.87□□□□□ -0.35
LIME1-208ENST00000493265 ARL14EPLP0DKL9 152 aa12.87□□□□□ -0.35
LIME1-208ENST00000493265 UBE2L3P68036 154 aaKnown RBP12.87□□□□□ -0.35
LIME1-208ENST00000493265 IGFL4Q6B9Z1 124 aa12.87□□□□□ -0.35
LIME1-208ENST00000493265 FAM24BQ8N5W8 94 aa12.87□□□□□ -0.35
LIME1-208ENST00000493265 RNF141Q8WVD5 230 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms