RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	RBPMS2	Q6ZRY4	209 aa	Known RBP	6.58	□□□□□ -1.36
USP4-213	ENST00000488520	C8orf49	Q96NF6	230 aa		6.58	□□□□□ -1.36
USP4-213	ENST00000488520	AQP10	Q96PS8	301 aa		6.58	□□□□□ -1.36
USP4-213	ENST00000488520	RETN	Q9HD89	108 aa		6.58	□□□□□ -1.36
USP4-213	ENST00000488520	KCNIP2	Q9NS61	270 aa		6.58	□□□□□ -1.36
USP4-213	ENST00000488520	TECR	Q9NZ01	308 aa	Known RBP	6.58	□□□□□ -1.36
USP4-213	ENST00000488520	MRPL36	Q9P0J6	103 aa	Known RBP	6.58	□□□□□ -1.36
USP4-213	ENST00000488520	IGHV3OR16-8	A0A075B7F1	116 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	UBE2L5P	A0A1B0GUS4	154 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	KANTR	A0A1W2PQU2	76 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	ZNF207	O43670	478 aa	Known RBP	6.57	□□□□□ -1.36
USP4-213	ENST00000488520	HYPM	O75409	117 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	IGKV1-17	P01599	117 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	HNRNPC	P07910	306 aa	Known RBP eCLIP	6.57	□□□□□ -1.36
USP4-213	ENST00000488520	OR5G3	P0C626	314 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	FOLR2	P14207	255 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	CBLN1	P23435	193 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	PXDC1	Q5TGL8	231 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	TCTE3	Q8IZS6	198 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	OR1L4	Q8NGR5	311 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	OR1B1	Q8NGR6	318 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	TMEM190	Q8WZ59	177 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	HYLS1	Q96M11	299 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	FAM110A	Q9BQ89	295 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	KRTAP3-1	Q9BYR8	98 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	ARL6	Q9H0F7	186 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	TNFSF18	Q9UNG2	199 aa		6.57	□□□□□ -1.36
USP4-213	ENST00000488520	IGHV7-4-1	A0A0J9YVY3	117 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520		A0A1B0GVG6	124 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	C2orf70	A6NJV1	201 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	DNASE2	O00115	360 aa	Predicted RBP	6.56	□□□□□ -1.36
USP4-213	ENST00000488520	COX7A2P2	O60397	106 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	CSN3	P07498	182 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	LINC00869	P0C866	280 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	EIF5A	P63241	154 aa	Known RBP	6.56	□□□□□ -1.36
USP4-213	ENST00000488520	VWC2	Q2TAL6	325 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	ZFP69	Q49AA0	526 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	UNQ9165/PRO28630	Q6UXU0	137 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	OR2K2	Q8NGT1	345 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	RNF125	Q96EQ8	232 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	ST6GAL2	Q96JF0	529 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	PFDN5	Q99471	154 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	ARPC5L	Q9BPX5	153 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	RHPN1-AS1	Q9BWJ2	59 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	TUBA4B	Q9H853	241 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	DNAJC4	Q9NNZ3	241 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	SIGLEC8	Q9NYZ4	499 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	SMPX	Q9UHP9	88 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	HIGD1A	Q9Y241	93 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	WDR83OS	Q9Y284	106 aa		6.56	□□□□□ -1.36
USP4-213	ENST00000488520	IGKV1D-37	A0A075B6S9	117 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520		A8MWP6	167 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520		A8MZ25	164 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520	IGLV1-51	P01701	117 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520	C1QB	P02746	253 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520	GATA2	P23769	480 aa	Predicted RBP	6.55	□□□□□ -1.36
USP4-213	ENST00000488520	RPL29	P47914	159 aa	Known RBP	6.55	□□□□□ -1.36
USP4-213	ENST00000488520	B2M	P61769	119 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520	ICAM4	Q14773	271 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520	GUCA2B	Q16661	112 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520	C10orf113	Q5VZT2	155 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520	LCN12	Q6JVE5	192 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520	GNPNAT1	Q96EK6	184 aa	Predicted RBP	6.55	□□□□□ -1.36
USP4-213	ENST00000488520	NEURL2	Q9BR09	285 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520	WDR61	Q9GZS3	305 aa	Known RBP	6.55	□□□□□ -1.36
USP4-213	ENST00000488520	FBXL17	Q9UF56	701 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520	SLC45A2	Q9UMX9	530 aa		6.55	□□□□□ -1.36
USP4-213	ENST00000488520	IGKV1OR2-108	A0A075B7D4	117 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	IGHV3OR16-13	A0A075B7E8	117 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	IGHV3-49	A0A0A0MS15	119 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	IGHV3-74	A0A0B4J1X5	117 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	TRAV25	A0A0B4J276	109 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	IGHV3-66	A0A0C4DH42	116 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	HELT	A6NFD8	242 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	CHEK1	O14757	476 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	MB	P02144	154 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	C8orf88	P0DMB2	117 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	CRYBB3	P26998	211 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	CMC4	P56277	68 aa	Predicted RBP	6.54	□□□□□ -1.36
USP4-213	ENST00000488520	DEFB114	Q30KQ6	69 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	ACOT6	Q3I5F7	207 aa	Predicted RBP	6.54	□□□□□ -1.36
USP4-213	ENST00000488520	MIC13	Q5XKP0	118 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	TMUB2	Q71RG4	321 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	OR8I2	Q8N0Y5	310 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	KCNRG	Q8N5I3	272 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	LRRC20	Q8TCA0	184 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	GPR82	Q96P67	336 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	RNF2	Q99496	336 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	MGST2	Q99735	147 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	NPCDR1	Q9BY65	106 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	PARD6G	Q9BYG4	376 aa	Predicted RBP	6.54	□□□□□ -1.36
USP4-213	ENST00000488520	ARV1	Q9H2C2	271 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	SLC39A9	Q9NUM3	307 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	DOK5	Q9P104	306 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	PXMP4	Q9Y6I8	212 aa		6.54	□□□□□ -1.36
USP4-213	ENST00000488520	IGKV3-7	A0A075B6H7	116 aa		6.53	□□□□□ -1.36
USP4-213	ENST00000488520		A0A1W2PPV4	95 aa		6.53	□□□□□ -1.36
USP4-213	ENST00000488520	TMEM213	A2RRL7	107 aa		6.53	□□□□□ -1.36
USP4-213	ENST00000488520	RBMY1B	A6NDE4	496 aa	Known RBP	6.53	□□□□□ -1.36
USP4-213	ENST00000488520	RBMY1E	A6NEQ0	496 aa	Known RBP	6.53	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 441.4 ms