RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 CLEC5AQ9NY25 188 aa10.95□□□□□ -0.66
TRIM54-204ENST00000488321 UBE2L5PA0A1B0GUS4 154 aa10.94□□□□□ -0.66
TRIM54-204ENST00000488321 CXorf65A6NEN9 183 aa10.94□□□□□ -0.66
TRIM54-204ENST00000488321 H3BMM0 161 aa10.94□□□□□ -0.66
TRIM54-204ENST00000488321 COX7A2P2O60397 106 aa10.94□□□□□ -0.66
TRIM54-204ENST00000488321 HLA-DRB4P13762 266 aa10.94□□□□□ -0.66
TRIM54-204ENST00000488321 RPL7P18124 248 aaKnown RBP10.94□□□□□ -0.66
TRIM54-204ENST00000488321 ATF4P18848 351 aaPredicted RBP10.94□□□□□ -0.66
TRIM54-204ENST00000488321 S100A11P31949 105 aa10.94□□□□□ -0.66
TRIM54-204ENST00000488321 CAMLGP49069 296 aa10.94□□□□□ -0.66
TRIM54-204ENST00000488321 NUTF2P61970 127 aaKnown RBP10.94□□□□□ -0.66
TRIM54-204ENST00000488321 EWSR1Q01844 656 aaKnown RBP eCLIP10.94□□□□□ -0.66
TRIM54-204ENST00000488321 BAXQ07812 192 aa10.94□□□□□ -0.66
TRIM54-204ENST00000488321 TMEM41BQ5BJD5 291 aa10.94□□□□□ -0.66
TRIM54-204ENST00000488321 NMES1Q9C002 83 aa10.94□□□□□ -0.66
TRIM54-204ENST00000488321 HLA-DRB4X5D2U9 266 aa10.94□□□□□ -0.66
TRIM54-204ENST00000488321 GIG44P09565 113 aaPredicted RBP10.93□□□□□ -0.66
TRIM54-204ENST00000488321 CYCSP99999 105 aaKnown RBP10.93□□□□□ -0.66
TRIM54-204ENST00000488321 PXDC1Q5TGL8 231 aa10.93□□□□□ -0.66
TRIM54-204ENST00000488321 GDF5OSQ5U4N7 250 aa10.93□□□□□ -0.66
TRIM54-204ENST00000488321 EBLN2Q6P2I7 272 aa10.93□□□□□ -0.66
TRIM54-204ENST00000488321 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.93□□□□□ -0.66
TRIM54-204ENST00000488321 PATE2Q6UY27 113 aa10.93□□□□□ -0.66
TRIM54-204ENST00000488321 FOXI2Q6ZQN5 318 aa10.93□□□□□ -0.66
TRIM54-204ENST00000488321 OR4B1Q8NGF8 309 aa10.93□□□□□ -0.66
TRIM54-204ENST00000488321 SAV1Q9H4B6 383 aaPredicted RBP10.93□□□□□ -0.66
TRIM54-204ENST00000488321 RPRMQ9NS64 109 aa10.93□□□□□ -0.66
TRIM54-204ENST00000488321 E5RGE8 158 aa10.92□□□□□ -0.66
TRIM54-204ENST00000488321 F6UB75 175 aa10.92□□□□□ -0.66
TRIM54-204ENST00000488321 DEFB4AO15263 64 aa10.92□□□□□ -0.66
TRIM54-204ENST00000488321 IGFL4Q6B9Z1 124 aa10.92□□□□□ -0.66
TRIM54-204ENST00000488321 Q6ZRG5 221 aa10.92□□□□□ -0.66
TRIM54-204ENST00000488321 LINC00305Q7Z4B0 112 aa10.92□□□□□ -0.66
TRIM54-204ENST00000488321 C1QTNF4Q9BXJ3 329 aa10.92□□□□□ -0.66
TRIM54-204ENST00000488321 OR5AC2Q9NZP5 309 aa10.92□□□□□ -0.66
TRIM54-204ENST00000488321 XCL2Q9UBD3 114 aa10.92□□□□□ -0.66
TRIM54-204ENST00000488321 RNF24Q9Y225 148 aa10.92□□□□□ -0.66
TRIM54-204ENST00000488321 WDR83OSQ9Y284 106 aa10.92□□□□□ -0.66
TRIM54-204ENST00000488321 H2BFSP57053 126 aa10.91□□□□□ -0.66
TRIM54-204ENST00000488321 FXYD7P58549 80 aa10.91□□□□□ -0.66
TRIM54-204ENST00000488321 ATP6V1FQ16864 119 aa10.91□□□□□ -0.66
TRIM54-204ENST00000488321 VWC2Q2TAL6 325 aa10.91□□□□□ -0.66
TRIM54-204ENST00000488321 C10orf113Q5VZT2 155 aa10.91□□□□□ -0.66
TRIM54-204ENST00000488321 MIC13Q5XKP0 118 aa10.91□□□□□ -0.66
TRIM54-204ENST00000488321 LRRC20Q8TCA0 184 aa10.91□□□□□ -0.66
TRIM54-204ENST00000488321 PPP1R1CQ8WVI7 109 aa10.91□□□□□ -0.66
TRIM54-204ENST00000488321 C20orf173Q96LM9 149 aa10.91□□□□□ -0.66
TRIM54-204ENST00000488321 C17orf77Q96MU5 243 aa10.91□□□□□ -0.66
TRIM54-204ENST00000488321 SLC25A31Q9H0C2 315 aa10.91□□□□□ -0.66
TRIM54-204ENST00000488321 RYR3Q15413 4870 aa10.9□□□□□ -0.66
TRIM54-204ENST00000488321 ELOA3CA0A087WX78 387 aaPredicted RBP10.9□□□□□ -0.66
TRIM54-204ENST00000488321 FGF7P21781 194 aa10.9□□□□□ -0.66
TRIM54-204ENST00000488321 NHLH2Q02577 135 aa10.9□□□□□ -0.66
TRIM54-204ENST00000488321 FAM78BQ5VT40 261 aa10.9□□□□□ -0.66
TRIM54-204ENST00000488321 SPATA31B1PQ5VZV4 182 aa10.9□□□□□ -0.66
TRIM54-204ENST00000488321 RNF182Q8N6D2 247 aa10.9□□□□□ -0.66
TRIM54-204ENST00000488321 TMEM37Q8WXS4 190 aa10.9□□□□□ -0.66
TRIM54-204ENST00000488321 C11orf68Q9H3H3 251 aaKnown RBP10.9□□□□□ -0.66
TRIM54-204ENST00000488321 STARD9Q9P2P6 4700 aa10.9□□□□□ -0.67
TRIM54-204ENST00000488321 TRAV8-2A0A0B4J237 113 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 H0YIZ8 118 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 PTTG1O95997 202 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 SNRPCP09234 159 aaKnown RBP10.89□□□□□ -0.67
TRIM54-204ENST00000488321 PRR20EP86478 221 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 PRR20CP86479 221 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 PRR20DP86480 221 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 PRR20BP86481 221 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 PRR20AP86496 221 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 CLINT1Q14677 625 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 OR5C1Q8NGR4 320 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 OR1L4Q8NGR5 311 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 DNAJC4Q9NNZ3 241 aa10.89□□□□□ -0.67
TRIM54-204ENST00000488321 IGHV4-28A0A0C4DH34 117 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 A0A0J9YX75 114 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 PET100P0DJ07 73 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 MIFP14174 115 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 B2MP61769 119 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 PSG9Q00887 426 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 OPCMLQ14982 345 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 BPIFA4PQ86YQ2 179 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 CSNK1G2-AS1Q8NCQ2 148 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 ZNF738Q8NE65 137 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 C11orf45Q8TAV5 145 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 THAP6Q8TBB0 222 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 PFDN5Q99471 154 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 SLC35B3Q9H1N7 401 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 SLC39A9Q9NUM3 307 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 ALG5Q9Y673 324 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 PXMP4Q9Y6I8 212 aa10.88□□□□□ -0.67
TRIM54-204ENST00000488321 IGHV3OR16-12A0A075B7B8 117 aa10.87□□□□□ -0.67
TRIM54-204ENST00000488321 A0A087X0K7 114 aa10.87□□□□□ -0.67
TRIM54-204ENST00000488321 LCE6AA0A183 80 aa10.87□□□□□ -0.67
TRIM54-204ENST00000488321 NUPR2A6NF83 97 aa10.87□□□□□ -0.67
TRIM54-204ENST00000488321 ZNF705EA8MWA4 302 aaPredicted RBP10.87□□□□□ -0.67
TRIM54-204ENST00000488321 MPDU1O75352 247 aa10.87□□□□□ -0.67
TRIM54-204ENST00000488321 JTBO76095 146 aa10.87□□□□□ -0.67
TRIM54-204ENST00000488321 MPC2O95563 127 aa10.87□□□□□ -0.67
TRIM54-204ENST00000488321 RPL29P47914 159 aaKnown RBP10.87□□□□□ -0.67
TRIM54-204ENST00000488321 NANOS2P60321 138 aaKnown RBP10.87□□□□□ -0.67
TRIM54-204ENST00000488321 MORN5Q5VZ52 161 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms