RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 CFHR2P36980 270 aa12.4□□□□□ -0.42
HLA-DQB1-209ENST00000487676 TIMD4Q96H15 378 aa12.4□□□□□ -0.42
HLA-DQB1-209ENST00000487676 P0C879 139 aa12.39□□□□□ -0.43
HLA-DQB1-209ENST00000487676 SLC25A39Q9BZJ4 359 aaPredicted RBP12.39□□□□□ -0.43
HLA-DQB1-209ENST00000487676 CACNA1EQ15878 2313 aa12.39□□□□□ -0.43
HLA-DQB1-209ENST00000487676 FABP5P3A8MUU1 101 aa12.39□□□□□ -0.43
HLA-DQB1-209ENST00000487676 ARPC1AQ92747 370 aa12.39□□□□□ -0.43
HLA-DQB1-209ENST00000487676 WNK2Q9Y3S1 2297 aa12.39□□□□□ -0.43
HLA-DQB1-209ENST00000487676 ZNF503-AS2A6NEH8 195 aa12.39□□□□□ -0.43
HLA-DQB1-209ENST00000487676 LGALS3P17931 250 aaKnown RBP12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 VKORC1Q9BQB6 163 aa12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 IGKV1-16P04430 117 aa12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 FAM104BQ5XKR9 115 aa12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 HEATR1Q9H583 2144 aaKnown RBP12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 CEP250Q9BV73 2442 aa12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 IGKV1D-17A0A075B6S4 117 aa12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 C15orf65H3BRN8 121 aa12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 FXYD5Q96DB9 178 aa12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 H3BMG7 143 aa12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 TGFAP01135 160 aa12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 EVI2AP22794 236 aa12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 ZNF562Q6V9R5 426 aa12.38□□□□□ -0.43
HLA-DQB1-209ENST00000487676 PATE3B3GLJ2 98 aa12.37□□□□□ -0.43
HLA-DQB1-209ENST00000487676 SRSF1Q07955 248 aaKnown RBP eCLIP12.37□□□□□ -0.43
HLA-DQB1-209ENST00000487676 Q8N976 141 aa12.37□□□□□ -0.43
HLA-DQB1-209ENST00000487676 PGPEP1Q9NXJ5 209 aa12.37□□□□□ -0.43
HLA-DQB1-209ENST00000487676 SIGLEC8Q9NYZ4 499 aa12.37□□□□□ -0.43
HLA-DQB1-209ENST00000487676 PMS2CLQ68D20 193 aa12.37□□□□□ -0.43
HLA-DQB1-209ENST00000487676 ROS1P08922 2347 aa12.37□□□□□ -0.43
HLA-DQB1-209ENST00000487676 PVRIGQ6DKI7 326 aa12.37□□□□□ -0.43
HLA-DQB1-209ENST00000487676 SYT8Q8NBV8 401 aa12.37□□□□□ -0.43
HLA-DQB1-209ENST00000487676 EP300Q09472 2414 aaPredicted RBP12.37□□□□□ -0.43
HLA-DQB1-209ENST00000487676 PRRG2O14669 202 aa12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 EMP1P54849 157 aa12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 RNF125Q96EQ8 232 aa12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 ZNF815PA8K554 130 aa12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 J3KRW8 73 aa12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 LOXL3P58215 753 aa12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 SPATA12Q7Z6I5 190 aa12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 ZCCHC24Q8N2G6 241 aaKnown RBP12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 KMT2EQ8IZD2 1858 aa12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 CNOT1A5YKK6 2376 aaKnown RBP12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 CCL3L1P16619 93 aa12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 PLNP26678 52 aa12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 PCP2Q8IVA1 136 aa12.36□□□□□ -0.43
HLA-DQB1-209ENST00000487676 NPIPB6E9PJ23 425 aa12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 SMKR1H3BMG3 65 aa12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 DKK1O94907 266 aa12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 POU2AF1Q16633 256 aa12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 LYPD1Q8N2G4 141 aa12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 FBXL15Q9H469 300 aa12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 TMEM131Q92545 1883 aa12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 K7ERJ3 54 aa12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 SS18L1O75177 396 aaPredicted RBP12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 EP400Q96L91 3159 aa12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 AHRRA9YTQ3 701 aa12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 TMEM158Q8WZ71 300 aa12.35□□□□□ -0.43
HLA-DQB1-209ENST00000487676 DLX6P56179 175 aa12.34□□□□□ -0.43
HLA-DQB1-209ENST00000487676 CEND1Q8N111 149 aa12.34□□□□□ -0.43
HLA-DQB1-209ENST00000487676 NDUFA4L2Q9NRX3 87 aa12.34□□□□□ -0.43
HLA-DQB1-209ENST00000487676 BOD1L2Q8IYS8 172 aa12.34□□□□□ -0.43
HLA-DQB1-209ENST00000487676 TMEM213A2RRL7 107 aa12.34□□□□□ -0.43
HLA-DQB1-209ENST00000487676 NPIPB5A8MRT5 1133 aa12.34□□□□□ -0.43
HLA-DQB1-209ENST00000487676 LAGE3Q14657 143 aa12.34□□□□□ -0.43
HLA-DQB1-209ENST00000487676 LTAP01374 205 aa12.34□□□□□ -0.43
HLA-DQB1-209ENST00000487676 TAL2Q16559 108 aa12.34□□□□□ -0.43
HLA-DQB1-209ENST00000487676 TMEM170BQ5T4T1 132 aa12.34□□□□□ -0.43
HLA-DQB1-209ENST00000487676 TP73-AS1Q9UF72 201 aa12.34□□□□□ -0.43
HLA-DQB1-209ENST00000487676 ZNF134P52741 427 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 PAPPA-AS1Q5QFB9 102 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 BEX4Q9NWD9 120 aaPredicted RBP12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 PHLDA3Q9Y5J5 127 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 CGB1A6NKQ9 187 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 IGLV2-8P01709 118 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 AMTNQ6UX39 209 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 ASCL2Q99929 193 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 SH2D1AO60880 128 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 PRSS2P07478 247 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 DEFB109BQ30KR1 87 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 TRAV40A0A0B4J280 105 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 CRXO43186 299 aaPredicted RBP12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 ORMDL2Q53FV1 153 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 PPDPFLQ8WWR9 84 aa12.33□□□□□ -0.44
HLA-DQB1-209ENST00000487676 TMEM8BA6NDV4 472 aa12.32□□□□□ -0.44
HLA-DQB1-209ENST00000487676 Q0VFX4 171 aa12.32□□□□□ -0.44
HLA-DQB1-209ENST00000487676 RNFT1Q5M7Z0 435 aa12.32□□□□□ -0.44
HLA-DQB1-209ENST00000487676 NEU4Q8WWR8 484 aaPredicted RBP12.32□□□□□ -0.44
HLA-DQB1-209ENST00000487676 ZDBF2Q9HCK1 2354 aa12.32□□□□□ -0.44
HLA-DQB1-209ENST00000487676 SH2D6Q7Z4S9 175 aa12.32□□□□□ -0.44
HLA-DQB1-209ENST00000487676 PPP1R27Q86WC6 154 aa12.32□□□□□ -0.44
HLA-DQB1-209ENST00000487676 UBALD2Q8IYN6 164 aa12.32□□□□□ -0.44
HLA-DQB1-209ENST00000487676 NDUFS7O75251 213 aa12.32□□□□□ -0.44
HLA-DQB1-209ENST00000487676 MRPL51Q4U2R6 128 aaKnown RBP12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 DKK2Q9UBU2 259 aa12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 PRSS46E5RG02 174 aa12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 PPP1R17O96001 155 aa12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 PRB4P10163 310 aaPredicted RBP12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 TMEM75Q8N9X5 138 aa12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 FAM167A-AS1Q96KT0 104 aa12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 RIF1Q5UIP0 2472 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms