RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	NRN1	Q9NPD7	142 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	LYRM2	Q9NU23	88 aa	Predicted RBP	4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	RABAC1	Q9UI14	185 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	NACA	E9PAV3	2078 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	ZNF98	A6NK75	572 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	ZFP92	A6NM28	416 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792		G3V3Q6	166 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	SSSCA1	O60232	199 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	METTL15P1	P0C7V9	234 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	LYL1	P12980	280 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	NUP62	P37198	522 aa	Predicted RBP	4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	PAFAH1B2	P68402	229 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	RAB32	Q13637	225 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	GAGE13	Q4V321	117 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	CASC10	Q5T4H9	136 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	PXDC1	Q5TGL8	231 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	GDF5OS	Q5U4N7	250 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	SIGLEC15	Q6ZMC9	328 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	CYP2G1P	Q6ZSU1	146 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	APRG1	Q8IVJ8	170 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	TMEM252	Q8N6L7	170 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	MUC7	Q8TAX7	377 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	ARPC5L	Q9BPX5	153 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	WDR83OS	Q9Y284	106 aa		4.17	□□□□□ -1.74
CUX1-208	ENST00000485792	MUC4	Q99102	2169 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792		A0A087X0K7	114 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	IGSF23	A1L1A6	192 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792		H3BMM0	161 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792		H3BRN7	92 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	SIX6	O95475	246 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	PTTG1	O95997	202 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	FABP1	P07148	127 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	S100A11	P31949	105 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	RPL29	P47914	159 aa	Known RBP	4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	SULT1A1	P50225	295 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	APOC4	P55056	127 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	DEFB131A	P59861	70 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	CYCS	P99999	105 aa	Known RBP	4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	GBGT1	Q8N5D6	347 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	BPIFC	Q8NFQ6	507 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	OR10P1	Q8NGE3	313 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	ENKUR	Q8TC29	256 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	GATAD1	Q8WUU5	269 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	TMEM37	Q8WXS4	190 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	GPR82	Q96P67	336 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	MGST2	Q99735	147 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	SHANK2-AS3	Q9BTD1	123 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	CSTL1	Q9H114	145 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	GPN1	Q9HCN4	374 aa	Predicted RBP	4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	GSKIP	Q9P0R6	139 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	FBXL17	Q9UF56	701 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	RFNG	Q9Y644	331 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	DNAH11	Q96DT5	4516 aa		4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	DYNC1H1	Q14204	4646 aa	Known RBP	4.16	□□□□□ -1.74
CUX1-208	ENST00000485792	DNAH17	Q9UFH2	4485 aa		4.15	□□□□□ -1.74
CUX1-208	ENST00000485792	HECTD4	Q9Y4D8	3996 aa		4.15	□□□□□ -1.74
CUX1-208	ENST00000485792	IGKV3-7	A0A075B6H7	116 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	TRAV8-2	A0A0B4J237	113 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	C5orf51	A6NDU8	294 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	FAM24A	A6NFZ4	105 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	ZNF705E	A8MWA4	302 aa	Predicted RBP	4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	ISLR	O14498	428 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	AGPAT2	O15120	278 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	MPC2	O95563	127 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	HLA-DRB4	P13762	266 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	TFPI2	P48307	235 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	PSMB3	P49720	205 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	DEFA1	P59665	94 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	DEFA3	P59666	94 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	OR2F1	Q13607	317 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	ATP6V1F	Q16864	119 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	TMEM41B	Q5BJD5	291 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	SAMD13	Q5VXD3	122 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	LEMD1	Q68G75	181 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	AMTN	Q6UX39	209 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	ZNF709	Q8N972	641 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	SAT2	Q96F10	170 aa	Predicted RBP	4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	NARS2	Q96I59	477 aa	Known RBP	4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	SLC25A32	Q9H2D1	315 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	OR5AC2	Q9NZP5	309 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792	HLA-DRB4	X5D2U9	266 aa		4.15	□□□□□ -1.75
CUX1-208	ENST00000485792		E5RGE8	158 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	DNASE2	O00115	360 aa	Predicted RBP	4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	SPRY2	O43597	315 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	MPDU1	O75352	247 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	HYPM	O75409	117 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	CST7	O76096	145 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	ZNF688	P0C7X2	276 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	RBMY1A1	P0DJD3	496 aa	Known RBP	4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	RBMY1C	P0DJD4	496 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	IGLC2	P0DOY2	106 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	SPP1	P10451	314 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	CXCL3	P19876	107 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	HLA-DMB	P28068	263 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	MEOX2	P50222	304 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	LYZ	P61626	148 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	NHLH2	Q02577	135 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	AKR1C1	Q04828	323 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms