RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 ZNF207O43670 478 aaKnown RBP12.41□□□□□ -0.42
TRIM54-203ENST00000485306 HYPMO75409 117 aa12.41□□□□□ -0.42
TRIM54-203ENST00000485306 MBP02144 154 aa12.41□□□□□ -0.42
TRIM54-203ENST00000485306 RBMY1DP0C7P1 496 aaKnown RBP12.41□□□□□ -0.42
TRIM54-203ENST00000485306 GATA2P23769 480 aaPredicted RBP12.41□□□□□ -0.42
TRIM54-203ENST00000485306 LYZP61626 148 aa12.41□□□□□ -0.42
TRIM54-203ENST00000485306 NARS2Q96I59 477 aaKnown RBP12.41□□□□□ -0.42
TRIM54-203ENST00000485306 PFDN5Q99471 154 aa12.41□□□□□ -0.42
TRIM54-203ENST00000485306 SPAG8Q99932 426 aaPredicted RBP12.41□□□□□ -0.42
TRIM54-203ENST00000485306 RSG1Q9BU20 258 aa12.41□□□□□ -0.42
TRIM54-203ENST00000485306 WFDC10AQ9H1F0 79 aa12.41□□□□□ -0.42
TRIM54-203ENST00000485306 EDA2RQ9HAV5 297 aa12.41□□□□□ -0.42
TRIM54-203ENST00000485306 RABAC1Q9UI14 185 aa12.41□□□□□ -0.42
TRIM54-203ENST00000485306 A0A1W2PS18 150 aa12.4□□□□□ -0.42
TRIM54-203ENST00000485306 TSPAN4O14817 238 aa12.4□□□□□ -0.42
TRIM54-203ENST00000485306 SEC11BP0C7V7 166 aa12.4□□□□□ -0.42
TRIM54-203ENST00000485306 NPPCP23582 126 aa12.4□□□□□ -0.42
TRIM54-203ENST00000485306 GATAD1Q8WUU5 269 aa12.4□□□□□ -0.42
TRIM54-203ENST00000485306 RNF2Q99496 336 aa12.4□□□□□ -0.42
TRIM54-203ENST00000485306 PBDC1Q9BVG4 233 aa12.4□□□□□ -0.42
TRIM54-203ENST00000485306 KMT2CQ8NEZ4 4911 aaKnown RBP12.39□□□□□ -0.43
TRIM54-203ENST00000485306 COX7A2P2O60397 106 aa12.39□□□□□ -0.43
TRIM54-203ENST00000485306 SPP1P10451 314 aa12.39□□□□□ -0.43
TRIM54-203ENST00000485306 ORM2P19652 201 aa12.39□□□□□ -0.43
TRIM54-203ENST00000485306 CRYBB3P26998 211 aa12.39□□□□□ -0.43
TRIM54-203ENST00000485306 USF2Q15853 346 aaPredicted RBP12.39□□□□□ -0.43
TRIM54-203ENST00000485306 OR1B1Q8NGR6 318 aa12.39□□□□□ -0.43
TRIM54-203ENST00000485306 TMEM231Q9H6L2 316 aa12.39□□□□□ -0.43
TRIM54-203ENST00000485306 DNAJC4Q9NNZ3 241 aa12.39□□□□□ -0.43
TRIM54-203ENST00000485306 HIGD1AQ9Y241 93 aa12.39□□□□□ -0.43
TRIM54-203ENST00000485306 LOC102724200A0A096LPH7 203 aaPredicted RBP12.38□□□□□ -0.43
TRIM54-203ENST00000485306 ACOT6Q3I5F7 207 aaPredicted RBP12.38□□□□□ -0.43
TRIM54-203ENST00000485306 FFAR4Q5NUL3 377 aa12.38□□□□□ -0.43
TRIM54-203ENST00000485306 ST8SIA2Q92186 375 aa12.38□□□□□ -0.43
TRIM54-203ENST00000485306 SLC25A32Q9H2D1 315 aa12.38□□□□□ -0.43
TRIM54-203ENST00000485306 SMPXQ9UHP9 88 aa12.38□□□□□ -0.43
TRIM54-203ENST00000485306 U3KQE9 123 aa12.38□□□□□ -0.43
TRIM54-203ENST00000485306 IGHV7-4-1A0A0J9YVY3 117 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 OR4C46A6NHA9 309 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 CD5P06127 495 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 OR5G3P0C626 314 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 M6PRP20645 277 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 C10orf113Q5VZT2 155 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 IL17DQ8TAD2 202 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 TMEM37Q8WXS4 190 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 PHYHIPLQ96FC7 376 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 GRAMD2BQ96HH9 432 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 SH3BGRL3Q9H299 93 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 RETNQ9HD89 108 aa12.37□□□□□ -0.43
TRIM54-203ENST00000485306 UMAD1C9J7I0 102 aa12.36□□□□□ -0.43
TRIM54-203ENST00000485306 C1orf194Q5T5A4 169 aa12.36□□□□□ -0.43
TRIM54-203ENST00000485306 SHANK2-AS3Q9BTD1 123 aa12.36□□□□□ -0.43
TRIM54-203ENST00000485306 RHPN1-AS1Q9BWJ2 59 aa12.36□□□□□ -0.43
TRIM54-203ENST00000485306 MRPL32Q9BYC8 188 aaKnown RBP12.36□□□□□ -0.43
TRIM54-203ENST00000485306 VSIRQ9H7M9 311 aa12.36□□□□□ -0.43
TRIM54-203ENST00000485306 DOK5Q9P104 306 aa12.36□□□□□ -0.43
TRIM54-203ENST00000485306 IGHV3-49A0A0A0MS15 119 aa12.35□□□□□ -0.43
TRIM54-203ENST00000485306 CHEK1O14757 476 aa12.35□□□□□ -0.43
TRIM54-203ENST00000485306 BUB3O43684 328 aa12.35□□□□□ -0.43
TRIM54-203ENST00000485306 CMC4P56277 68 aaPredicted RBP12.35□□□□□ -0.43
TRIM54-203ENST00000485306 AKR1C8PQ5T2L2 129 aa12.35□□□□□ -0.43
TRIM54-203ENST00000485306 ZFAND6Q6FIF0 208 aa12.35□□□□□ -0.43
TRIM54-203ENST00000485306 PATE2Q6UY27 113 aa12.35□□□□□ -0.43
TRIM54-203ENST00000485306 FAM110AQ9BQ89 295 aa12.35□□□□□ -0.43
TRIM54-203ENST00000485306 SLC25A39Q9BZJ4 359 aaPredicted RBP12.35□□□□□ -0.43
TRIM54-203ENST00000485306 DNAH7Q8WXX0 4024 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 H3BRN7 92 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 RAB5CP51148 216 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 APOC4P55056 127 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 RHOBP62745 196 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 TMEM41BQ5BJD5 291 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 DPPA3Q6W0C5 159 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 LINC00305Q7Z4B0 112 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 OR10G4Q8NGN3 311 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 OR10G9Q8NGN4 311 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 OR10G7Q8NGN6 311 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 GPR82Q96P67 336 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 UBQLN2Q9UHD9 624 aa12.34□□□□□ -0.43
TRIM54-203ENST00000485306 IGHV3OR16-13A0A075B7E8 117 aa12.33□□□□□ -0.44
TRIM54-203ENST00000485306 IGHV3-74A0A0B4J1X5 117 aa12.33□□□□□ -0.44
TRIM54-203ENST00000485306 ZNF98A6NK75 572 aa12.33□□□□□ -0.44
TRIM54-203ENST00000485306 PAFAH1B2P68402 229 aa12.33□□□□□ -0.44
TRIM54-203ENST00000485306 GCSAMLQ5JQS6 135 aa12.33□□□□□ -0.44
TRIM54-203ENST00000485306 FAM78BQ5VT40 261 aa12.33□□□□□ -0.44
TRIM54-203ENST00000485306 FUT9Q9Y231 359 aa12.33□□□□□ -0.44
TRIM54-203ENST00000485306 A0A1W2PPV4 95 aa12.32□□□□□ -0.44
TRIM54-203ENST00000485306 HELTA6NFD8 242 aa12.32□□□□□ -0.44
TRIM54-203ENST00000485306 UBE2CO00762 179 aa12.32□□□□□ -0.44
TRIM54-203ENST00000485306 RPL7P18124 248 aaKnown RBP12.32□□□□□ -0.44
TRIM54-203ENST00000485306 TAS2R45P59539 299 aa12.32□□□□□ -0.44
TRIM54-203ENST00000485306 RAB2AP61019 212 aa12.32□□□□□ -0.44
TRIM54-203ENST00000485306 C16orf54Q6UWD8 224 aa12.32□□□□□ -0.44
TRIM54-203ENST00000485306 STXBP6Q8NFX7 210 aa12.32□□□□□ -0.44
TRIM54-203ENST00000485306 TMED6Q8WW62 240 aa12.32□□□□□ -0.44
TRIM54-203ENST00000485306 ACTR3CQ9C0K3 210 aaPredicted RBP12.32□□□□□ -0.44
TRIM54-203ENST00000485306 RPRMQ9NS64 109 aa12.32□□□□□ -0.44
TRIM54-203ENST00000485306 RFNGQ9Y644 331 aa12.32□□□□□ -0.44
TRIM54-203ENST00000485306 APOHP02749 345 aaPredicted RBP12.31□□□□□ -0.44
TRIM54-203ENST00000485306 OR8I2Q8N0Y5 310 aa12.31□□□□□ -0.44
TRIM54-203ENST00000485306 RPP25LQ8N5L8 163 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms