RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 A0A087WX48 190 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 NDUFC2O95298 119 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 TCRAP04437 139 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 FXYD7P58549 80 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 GAGE1Q13065 139 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 ZNF672Q499Z4 452 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-224ENST00000478916 NABP1Q96AH0 204 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 RCHY1Q96PM5 261 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 C20orf144Q9BQM9 153 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 MPDZO75970 2070 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 PDCD11Q14690 1871 aaKnown RBP7.25□□□□□ -1.25
SYNE1-224ENST00000478916 RPL36AP83881 106 aaKnown RBP7.25□□□□□ -1.25
SYNE1-224ENST00000478916 FOXF2Q12947 444 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 SLAQ13239 276 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 RPL36ALQ969Q0 106 aaKnown RBP7.25□□□□□ -1.25
SYNE1-224ENST00000478916 LCTP09848 1927 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 ZNF474Q6S9Z5 364 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-224ENST00000478916 SNHG12Q9BXW3 62 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 FBLN5Q9UBX5 448 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 POLR3KQ9Y2Y1 108 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-224ENST00000478916 K7EP13 123 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 RBM3P98179 157 aaKnown RBP7.25□□□□□ -1.25
SYNE1-224ENST00000478916 GAGE12HA6NDE8 117 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 PRIMA1Q86XR5 153 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 ABCA7Q8IZY2 2146 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 ZDBF2Q9HCK1 2354 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 FCN3O75636 299 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 LYNX1G3V0Z9 82 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 LYNX1P0DP58 116 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 TREML4Q6UXN2 200 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 LCNL1Q6ZST4 164 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 PAX8Q06710 450 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 SH2D1AO60880 128 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 SLC25A16P16260 332 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 DUTP33316 252 aaKnown RBP7.24□□□□□ -1.25
SYNE1-224ENST00000478916 SBF1O95248 1867 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 ZNF114Q8NC26 417 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 CYTL1Q9NRR1 136 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 PMS2P5A8MQ11 134 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 AZU1P20160 251 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 SRSF7Q16629 238 aaKnown RBP eCLIP7.24□□□□□ -1.25
SYNE1-224ENST00000478916 VMO1Q7Z5L0 202 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 GGNQ86UU5 652 aa7.24□□□□□ -1.25
SYNE1-224ENST00000478916 SCN5AQ14524 2016 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 EXOC3-AS1Q8N2X6 119 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 LY6G5BQ8NDX9 201 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 K7EP34 96 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 TIMM23O14925 209 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 A0A0G2JNJ9 132 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 ZNF138P52744 262 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 MINOS1Q5TGZ0 78 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 BMPERQ8N8U9 685 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 SPXQ9BT56 116 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 Q9UFV3 132 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 MINOS1-NBL1R4GNA1 71 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 TRAV41A0A0B4J266 112 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 GAGE12JA6NER3 117 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 OOSP1A8MZH6 123 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 GAGE7O76087 117 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 GAGE12FP0CL80 117 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 GAGE12GP0CL81 117 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 GAGE12IP0CL82 117 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 GAGE4Q13068 117 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 MDS2Q8NDY4 140 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 THADAQ6YHU6 1953 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 NPSP0C0P6 89 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 Q0VG73 95 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 GAGE5Q13069 117 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 GAGE6Q13070 117 aa7.23□□□□□ -1.25
SYNE1-224ENST00000478916 ZCCHC24Q8N2G6 241 aaKnown RBP7.23□□□□□ -1.25
SYNE1-224ENST00000478916 SS18Q15532 418 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 IGHV3-73A0A0B4J1V6 119 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 ANKRD29Q8N6D5 301 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 HAMPP81172 84 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 STPG4Q8N801 248 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 IGHV2-26A0A0B4J1V2 119 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 MBD3L4A6NDZ8 208 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-224ENST00000478916 MBD3L3A6NE82 208 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-224ENST00000478916 MBD3L5A6NJ08 208 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-224ENST00000478916 Q6ZS92 163 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 MBD3L2Q8NHZ7 208 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-224ENST00000478916 LYZL4Q96KX0 146 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 TRGV9Q99603 122 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 GFRA4Q9GZZ7 299 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 LINC00477Q96M19 166 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 DSCR8Q96T75 97 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 SAP30O75446 220 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 Q0VFX4 171 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 WFDC12Q8WWY7 111 aa7.22□□□□□ -1.25
SYNE1-224ENST00000478916 MBNL3Q9NUK0 354 aaKnown RBP7.22□□□□□ -1.25
SYNE1-224ENST00000478916 LRRK1Q38SD2 2015 aa7.21□□□□□ -1.25
SYNE1-224ENST00000478916 SRD5A1P18405 259 aa7.21□□□□□ -1.25
SYNE1-224ENST00000478916 SPATA31B1PQ5VZV4 182 aa7.21□□□□□ -1.25
SYNE1-224ENST00000478916 LINC01356Q8N9X3 169 aa7.21□□□□□ -1.25
SYNE1-224ENST00000478916 DIDO1Q9BTC0 2240 aaKnown RBP7.21□□□□□ -1.25
SYNE1-224ENST00000478916 M0R1W7 72 aa7.21□□□□□ -1.25
SYNE1-224ENST00000478916 IGHG3P01860 377 aa7.21□□□□□ -1.25
SYNE1-224ENST00000478916 KLHDC3Q9BQ90 382 aa7.21□□□□□ -1.25
SYNE1-224ENST00000478916 PRB3Q04118 309 aaPredicted RBP7.21□□□□□ -1.26
SYNE1-224ENST00000478916 MCRIP2Q9BUT9 160 aaKnown RBP7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms