RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 HEATR5BQ9P2D3 2071 aa1.89□□□□□ -2.11
UPF3B-203ENST00000478840 SORL1Q92673 2214 aa1.89□□□□□ -2.11
UPF3B-203ENST00000478840 GNG14A0A1W2PPG7 69 aa1.89□□□□□ -2.11
UPF3B-203ENST00000478840 E7EQ34 232 aa1.89□□□□□ -2.11
UPF3B-203ENST00000478840 TMBIM6P55061 237 aa1.89□□□□□ -2.11
UPF3B-203ENST00000478840 DEFB119Q8N690 84 aa1.89□□□□□ -2.11
UPF3B-203ENST00000478840 CCDC32Q9BV29 185 aa1.89□□□□□ -2.11
UPF3B-203ENST00000478840 NDUFAF1Q9Y375 327 aa1.89□□□□□ -2.11
UPF3B-203ENST00000478840 LY96Q9Y6Y9 160 aa1.89□□□□□ -2.11
UPF3B-203ENST00000478840 PIK3C2AO00443 1686 aa1.89□□□□□ -2.11
UPF3B-203ENST00000478840 HIST1H2BKO60814 126 aa1.88□□□□□ -2.11
UPF3B-203ENST00000478840 PRB1P04280 392 aa1.88□□□□□ -2.11
UPF3B-203ENST00000478840 HIST1H2BJP06899 126 aa1.88□□□□□ -2.11
UPF3B-203ENST00000478840 CDK5R1Q15078 307 aa1.88□□□□□ -2.11
UPF3B-203ENST00000478840 KRTAP5-7Q6L8G8 165 aa1.88□□□□□ -2.11
UPF3B-203ENST00000478840 OR2T35Q8NGX2 323 aa1.88□□□□□ -2.11
UPF3B-203ENST00000478840 ISOC1Q96CN7 298 aa1.88□□□□□ -2.11
UPF3B-203ENST00000478840 RMND5BQ96G75 393 aaPredicted RBP1.88□□□□□ -2.11
UPF3B-203ENST00000478840 RETNLBQ9BQ08 111 aa1.88□□□□□ -2.11
UPF3B-203ENST00000478840 OR2H1Q9GZK4 316 aa1.88□□□□□ -2.11
UPF3B-203ENST00000478840 CACYBPQ9HB71 228 aaKnown RBP1.88□□□□□ -2.11
UPF3B-203ENST00000478840 RNF11Q9Y3C5 154 aa1.88□□□□□ -2.11
UPF3B-203ENST00000478840 CHCHD2Q9Y6H1 151 aaPredicted RBP1.88□□□□□ -2.11
UPF3B-203ENST00000478840 ARHGEF11O15085 1522 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 TRDV1A0A1B0GX56 115 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 ODAMA1E959 279 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 PRORSD1PA6NEY8 169 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 H3BQV1 296 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 HYPMO75409 117 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 NBEAP1P0C6P0 100 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 HBBP68871 147 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 MSMO1Q15800 293 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 ANGPTL5Q86XS5 388 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 ST6GALNAC3Q8NDV1 305 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 BORCS8Q96FH0 119 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 OTORQ9NRC9 128 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 LAMB2P55268 1798 aa1.87□□□□□ -2.11
UPF3B-203ENST00000478840 ANKRD30AQ9BXX3 1397 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 B4DSR2 109 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 C17orf112F2Z3M2 114 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 H7BYZ3 331 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 HCRTO43612 131 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 CST7O76096 145 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 IGLV1-51P01701 117 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 IFNA4P05014 189 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 OR10J4P0C629 311 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 DSCR4P56555 118 aaPredicted RBP1.86□□□□□ -2.11
UPF3B-203ENST00000478840 CNBPP62633 177 aaKnown RBP1.86□□□□□ -2.11
UPF3B-203ENST00000478840 TMEM128Q5BJH2 165 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 CROCCP2Q86T23 111 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 AKAP14Q86UN6 197 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 MED12LQ86YW9 2145 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 OR5D16Q8NGK9 328 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 TMEM254Q8TBM7 123 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 THEM6Q8WUY1 208 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 C4orf3Q8WVX3 66 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 EFCAB11Q9BUY7 163 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 LRTM1Q9HBL6 345 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 MYH10P35580 1976 aa1.86□□□□□ -2.11
UPF3B-203ENST00000478840 FRMPD1Q5SYB0 1578 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 N4BP2Q86UW6 1770 aaPredicted RBP1.85□□□□□ -2.11
UPF3B-203ENST00000478840 TNS3Q68CZ2 1445 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 TRAPPC8Q9Y2L5 1435 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 A0A087WSZ3 146 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 IGKV3D-7A0A0C4DH55 119 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 IGKV3OR2-268A0A0C4DH90 116 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 E7EUB6 86 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 K7ERJ3 54 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 FAM107AO95990 144 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 BCL2P10415 239 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 RPL35P42766 123 aaKnown RBP1.85□□□□□ -2.11
UPF3B-203ENST00000478840 ZNF714Q96N38 554 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 LAMTOR2Q9Y2Q5 125 aa1.85□□□□□ -2.11
UPF3B-203ENST00000478840 ALPK2Q86TB3 2170 aa1.84□□□□□ -2.11
UPF3B-203ENST00000478840 TCRBV4S1A1TA0A5B7 111 aa1.84□□□□□ -2.11
UPF3B-203ENST00000478840 TSTD3H0UI37 97 aa1.84□□□□□ -2.11
UPF3B-203ENST00000478840 KLRD1Q13241 179 aa1.84□□□□□ -2.11
UPF3B-203ENST00000478840 POP5Q969H6 163 aaKnown RBP1.84□□□□□ -2.11
UPF3B-203ENST00000478840 RASL12Q9NYN1 266 aa1.84□□□□□ -2.11
UPF3B-203ENST00000478840 RTL9Q8NET4 1388 aa1.84□□□□□ -2.12
UPF3B-203ENST00000478840 TRIOBPQ9H2D6 2365 aa1.84□□□□□ -2.12
UPF3B-203ENST00000478840 TRBV6-8A0A0A6YYG3 113 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 RER1O15258 196 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 RAB5CP51148 216 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 POLR2HP52434 150 aaKnown RBP1.83□□□□□ -2.12
UPF3B-203ENST00000478840 EIF3IQ13347 325 aaKnown RBP1.83□□□□□ -2.12
UPF3B-203ENST00000478840 SURF2Q15527 256 aaPredicted RBP1.83□□□□□ -2.12
UPF3B-203ENST00000478840 SAMD13Q5VXD3 122 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 KRTAP26-1Q6PEX3 210 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 C4orf22Q6V702 233 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 Q8N814 137 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 OR5D14Q8NGL3 314 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 OR9Q1Q8NGQ5 310 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 OR4K15Q8NH41 348 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 CHCHD1Q96BP2 118 aaKnown RBP1.83□□□□□ -2.12
UPF3B-203ENST00000478840 NAT8BQ9UHF3 227 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 ADGRB2O60241 1585 aa1.83□□□□□ -2.12
UPF3B-203ENST00000478840 KDM6AO15550 1401 aaPredicted RBP1.83□□□□□ -2.12
UPF3B-203ENST00000478840 SDK1Q7Z5N4 2213 aa1.82□□□□□ -2.12
UPF3B-203ENST00000478840 LOC110117498A0A087WWA1 95 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms