RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 DEFB1P60022 68 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 RAP2BP61225 183 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 IL15RAQ13261 267 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 PXDC1Q5TGL8 231 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 GDF5OSQ5U4N7 250 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 EBLN2Q6P2I7 272 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 C16orf92Q96LL3 132 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 SCRT1Q9BWW7 348 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 RPRMQ9NS64 109 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 PTTG2Q9NZH5 202 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 DOK5Q9P104 306 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 XCL2Q9UBD3 114 aa8.66□□□□□ -1.02
SYNE1-221ENST00000472563 A0A0J9YX75 114 aa8.65□□□□□ -1.02
SYNE1-221ENST00000472563 UPK1BO75841 260 aa8.65□□□□□ -1.02
SYNE1-221ENST00000472563 OR5G3P0C626 314 aa8.65□□□□□ -1.02
SYNE1-221ENST00000472563 RPL7P18124 248 aaKnown RBP8.65□□□□□ -1.02
SYNE1-221ENST00000472563 SLC38A11Q08AI6 406 aa8.65□□□□□ -1.02
SYNE1-221ENST00000472563 GSG1LQ6UXU4 331 aa8.65□□□□□ -1.02
SYNE1-221ENST00000472563 PATE2Q6UY27 113 aa8.65□□□□□ -1.02
SYNE1-221ENST00000472563 ZNF705AQ6ZN79 300 aaPredicted RBP8.65□□□□□ -1.02
SYNE1-221ENST00000472563 ZNF546Q86UE3 836 aa8.65□□□□□ -1.02
SYNE1-221ENST00000472563 C20orf173Q96LM9 149 aa8.65□□□□□ -1.02
SYNE1-221ENST00000472563 ARL6Q9H0F7 186 aa8.65□□□□□ -1.02
SYNE1-221ENST00000472563 C11orf1Q9H5F2 150 aa8.65□□□□□ -1.02
SYNE1-221ENST00000472563 RNF24Q9Y225 148 aa8.65□□□□□ -1.02
SYNE1-221ENST00000472563 LSM5Q9Y4Y9 91 aaKnown RBP8.65□□□□□ -1.02
SYNE1-221ENST00000472563 ELOA3CA0A087WX78 387 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-221ENST00000472563 GOSR2O14653 212 aa8.64□□□□□ -1.03
SYNE1-221ENST00000472563 AGPAT2O15120 278 aa8.64□□□□□ -1.03
SYNE1-221ENST00000472563 IGKV3-20P01619 116 aa8.64□□□□□ -1.03
SYNE1-221ENST00000472563 PVALBP20472 110 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-221ENST00000472563 BCAP31P51572 246 aa8.64□□□□□ -1.03
SYNE1-221ENST00000472563 CAV2P51636 162 aa8.64□□□□□ -1.03
SYNE1-221ENST00000472563 PSG9Q00887 426 aa8.64□□□□□ -1.03
SYNE1-221ENST00000472563 FAM78BQ5VT40 261 aa8.64□□□□□ -1.03
SYNE1-221ENST00000472563 OR4B1Q8NGF8 309 aa8.64□□□□□ -1.03
SYNE1-221ENST00000472563 ENKURQ8TC29 256 aa8.64□□□□□ -1.03
SYNE1-221ENST00000472563 UHRF2Q96PU4 802 aa8.64□□□□□ -1.03
SYNE1-221ENST00000472563 NEU1Q99519 415 aa8.64□□□□□ -1.03
SYNE1-221ENST00000472563 TRAV8-2A0A0B4J237 113 aa8.63□□□□□ -1.03
SYNE1-221ENST00000472563 FAM24AA6NFZ4 105 aa8.63□□□□□ -1.03
SYNE1-221ENST00000472563 SMIM9A6NGZ8 99 aa8.63□□□□□ -1.03
SYNE1-221ENST00000472563 A8MTW9 85 aa8.63□□□□□ -1.03
SYNE1-221ENST00000472563 ZNF705FA8MVS1 300 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-221ENST00000472563 C11orf94C9JXX5 98 aa8.63□□□□□ -1.03
SYNE1-221ENST00000472563 F6UB75 175 aa8.63□□□□□ -1.03
SYNE1-221ENST00000472563 LY6G6CO95867 125 aa8.63□□□□□ -1.03
SYNE1-221ENST00000472563 ZNF705DP0CH99 300 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-221ENST00000472563 ZNF705BP0CI00 300 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-221ENST00000472563 HLA-DMBP28068 263 aa8.63□□□□□ -1.03
SYNE1-221ENST00000472563 IFITM3Q01628 133 aa8.63□□□□□ -1.03
SYNE1-221ENST00000472563 ZNF709Q8N972 641 aa8.63□□□□□ -1.03
SYNE1-221ENST00000472563 GPN1Q9HCN4 374 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-221ENST00000472563 LYRM2Q9NU23 88 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-221ENST00000472563 A0A087X0K7 114 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 CST7O76096 145 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 S100A11P31949 105 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 CAMLGP49069 296 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 SULT1A1P50225 295 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 TCTAP57738 103 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 S100A10P60903 97 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 FGL1Q08830 312 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 RAB31Q13636 194 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 RAB32Q13637 225 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 VWC2Q2TAL6 325 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 C2CD4CQ8TF44 421 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 MGST2Q99735 147 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 SLC35B3Q9H1N7 401 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 ARV1Q9H2C2 271 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 UQCC1Q9NVA1 299 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 WDR83OSQ9Y284 106 aa8.62□□□□□ -1.03
SYNE1-221ENST00000472563 TMEM189A5PLL7 270 aa8.61□□□□□ -1.03
SYNE1-221ENST00000472563 MRPS12O15235 138 aaKnown RBP8.61□□□□□ -1.03
SYNE1-221ENST00000472563 PRAF2O60831 178 aa8.61□□□□□ -1.03
SYNE1-221ENST00000472563 DUSP14O95147 198 aaKnown RBP8.61□□□□□ -1.03
SYNE1-221ENST00000472563 FXYD7P58549 80 aa8.61□□□□□ -1.03
SYNE1-221ENST00000472563 IGFL4Q6B9Z1 124 aa8.61□□□□□ -1.03
SYNE1-221ENST00000472563 LGALS9CQ6DKI2 356 aa8.61□□□□□ -1.03
SYNE1-221ENST00000472563 AMTNQ6UX39 209 aa8.61□□□□□ -1.03
SYNE1-221ENST00000472563 LINC00305Q7Z4B0 112 aa8.61□□□□□ -1.03
SYNE1-221ENST00000472563 NRARPQ7Z6K4 114 aa8.61□□□□□ -1.03
SYNE1-221ENST00000472563 TMEM252Q8N6L7 170 aa8.61□□□□□ -1.03
SYNE1-221ENST00000472563 BATF3Q9NR55 127 aa8.61□□□□□ -1.03
SYNE1-221ENST00000472563 GOLT1BQ9Y3E0 138 aa8.61□□□□□ -1.03
SYNE1-221ENST00000472563 TRAV10A0A0B4J240 114 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 IGSF23A1L1A6 192 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 INMT-MINDY4F8WBC2 141 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 COX7A2P2O60397 106 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 AMBPP02760 352 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 CXCL2P19875 107 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 CXCL3P19876 107 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 CNN1P51911 297 aaKnown RBP8.6□□□□□ -1.03
SYNE1-221ENST00000472563 HBG1P69891 147 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 HBG2P69892 147 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 PRR20EP86478 221 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 PRR20CP86479 221 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 PRR20DP86480 221 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 PRR20BP86481 221 aa8.6□□□□□ -1.03
SYNE1-221ENST00000472563 PRR20AP86496 221 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms