RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 FAM19A2Q8N3H0 131 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 KIR3DL3Q8N743 410 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 C18orf32Q8TCD1 76 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 SMIM12Q96EX1 92 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 PRSS22Q9GZN4 317 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 RPP21Q9H633 154 aaKnown RBP7.05□□□□□ -1.28
SYNE1-217ENST00000466159 PPP1R14DQ9NXH3 145 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 KIR2DL5BA0A0G2JN68 375 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 KIR2DL5BA0A0G2JPC4 375 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 C19orf71A6NCJ1 209 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 IGLV2-11P01706 119 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 IL4P05112 153 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 KRTDAPP60985 99 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 NDPQ00604 133 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 GOLT1AQ6ZVE7 132 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 KIR2DL5AQ8N109 375 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 GTSF1Q8WW33 167 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 FANCD2OSQ96PS1 177 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 ASCL2Q99929 193 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 SHANK2-AS3Q9BTD1 123 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 NRN1Q9NPD7 142 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 EREGO14944 169 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 P01737 135 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 PRNTQ86SH4 94 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 Q86TA4 180 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 DTX2Q86UW9 622 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 RNF125Q96EQ8 232 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 ZFHX3Q15911 3703 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 TRBV19A0A075B6N1 114 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 A0A1B0GXF2 115 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 H3BRN7 92 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 ZNF324O75467 553 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-217ENST00000466159 FCGR2BP31994 310 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-217ENST00000466159 ZNF562Q6V9R5 426 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 TEX43Q6ZNM6 134 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 BPIFA4PQ86YQ2 179 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 OR2D3Q8NGH3 330 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 PGLYRP4Q96LB8 373 aa7.04□□□□□ -1.28
SYNE1-217ENST00000466159 IGLV11-55A0A075B6I3 123 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 A8MWL6 223 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 GNG7O60262 68 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 IGHV3-23P01764 117 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 IGLC2P0DOY2 106 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 SFTPCP11686 197 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 HOXB4P17483 251 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-217ENST00000466159 Q8N976 141 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 ARPC1AQ92747 370 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 DAZAP1Q96EP5 407 aaKnown RBP7.03□□□□□ -1.28
SYNE1-217ENST00000466159 ZNF492Q9P255 531 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 PAM16Q9Y3D7 125 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 F8W735 103 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-217ENST00000466159 NTF3P20783 257 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 SIGLEC15Q6ZMC9 328 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 ATP5L2Q7Z4Y8 100 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 NIT1Q86X76 327 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 OR4F17Q8NGA8 305 aa7.03□□□□□ -1.28
SYNE1-217ENST00000466159 ALKBH7Q9BT30 221 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-217ENST00000466159 CACNA1BQ00975 2339 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 WI2-2373I1.2A0A1W2PRP0 233 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 ZNF785A8K8V0 405 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 NPIPB5A8MRT5 1133 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 DIRC3C9JPN6 131 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 MRPS12O15235 138 aaKnown RBP7.02□□□□□ -1.29
SYNE1-217ENST00000466159 HLA-DRB1P01911 266 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 COL8A1P27658 744 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 MFAP4P55083 255 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 CCDC144NLQ6NUI1 221 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 C1orf122Q6ZSJ8 110 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 Q8N6K4 173 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 UBTD1Q9HAC8 227 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 M0R3E3 92 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 OR2J3O76001 311 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 TMEM11P17152 192 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 HBBP68871 147 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 Q56UQ5 140 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 CT83Q5H943 113 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 TTC9CQ8N5M4 171 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 ZNF414Q96IQ9 312 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 VAMP8Q9BV40 100 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 SNHG12Q9BXW3 62 aa7.02□□□□□ -1.29
SYNE1-217ENST00000466159 NPIPB6E9PJ23 425 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 NDUFB8O95169 186 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 C3orf79P0CE67 100 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 FAM120AOSQ5T036 256 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 ZC2HC1AQ96GY0 325 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 SIRPDQ9H106 197 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 VPS13CQ709C8 3753 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 TRAV30A0A087WSZ9 112 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 EGR2P11161 476 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-217ENST00000466159 FOXA3P55318 350 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-217ENST00000466159 KLF5Q13887 457 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-217ENST00000466159 MINOS1Q5TGZ0 78 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 ZNF705AQ6ZN79 300 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-217ENST00000466159 RBPMS2Q6ZRY4 209 aaKnown RBP7.01□□□□□ -1.29
SYNE1-217ENST00000466159 C20orf144Q9BQM9 153 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 C21orf62Q9NYP8 219 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 MINOS1-NBL1R4GNA1 71 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 ITPR1Q14643 2758 aa7.01□□□□□ -1.29
SYNE1-217ENST00000466159 IGHV7-81A0A0B4J1V7 117 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 OR2T8A6NH00 312 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms